C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168994-ENSG00000145945 CGP 9606 6:3722614-3851317
GeneTranscriptPositionBiotype
ENSG00000145945 (FAM50B)
family with sequence similarity 50, member B 		ENST00000380272 (FAM50B-001) 3849388-3851317 protein_coding
ENST00000380274 (FAM50B-002) 3849386-3851317 protein_coding
ENSG00000168994 (PXDC1)
PX domain containing 1 		ENST00000380277 (PXDC1-003) 3722620-3738894 protein_coding
ENST00000380283 (PXDC1-001) 3722620-3752026 protein_coding
ENST00000477592 (PXDC1-002) 3722614-3751532 processed_transcript
ENST00000485986 (PXDC1-004) 3738796-3751529 processed_transcript
ENSG00000219992 (RP11-420L9.2)
 ENST00000402155 (RP11-420L9.2-001) 3754099-3754840 processed_pseudogene
ENSG00000238158 (RP11-420L9.4)
 ENST00000454396 (RP11-420L9.4-001) 3831933-3855737 sense_overlapping
ENST00000602854 (RP11-420L9.4-003) 3831933-3833896 sense_overlapping
ENSG00000270504 (RP11-420L9.5)
 ENST00000603791 (RP11-420L9.5-001) 3751111-3753871 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003IP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021411-ENSMUSG00000038246 CGP 10090 13:34627840-34747613
GeneTranscriptPositionBiotype
ENSMUSG00000021411 (Pxdc1)
PX domain containing 1 		ENSMUST00000021847 (Pxdc1-001) 34627840-34652681 nonsense_mediated_decay
ENSMUST00000053459 (Pxdc1-002) 34627840-34652671 protein_coding
ENSMUST00000125037 (Pxdc1-003) 34627841-34652681 nonsense_mediated_decay
ENSMUST00000152392 (Pxdc1-004) 34628868-34648568 protein_coding
ENSMUSG00000038246 (Fam50b)
family with sequence similarity 50, member B 		ENSMUST00000039605 (Fam50b-201) 34734850-34747613 protein_coding
ENSMUSG00000086786 (Gm15908)
predicted gene 15908 		ENSMUST00000154345 (Gm15908-001) 34652923-34666774 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IP_0001ENSG00000145945ENST00000380272ENST00000380274ENSG00000168994ENST00000380277ENST00000380283ENST00000477592ENST00000485986ENSG00000219992ENST00000402155ENSG00000238158ENST00000454396ENST00000602854ENSG00000270504ENST00000603791CIL_0003IP_0002ENSMUSG00000021411ENSMUST00000021847ENSMUST00000053459ENSMUST00000125037ENSMUST00000152392ENSMUSG00000038246ENSMUST00000039605ENSMUSG00000086786ENSMUST00000154345
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IP_0001ENSG00000145945ENST00000380272ENST00000380274ENSG00000168994ENST00000380277ENST00000380283ENST00000477592ENSG00000219992ENST00000402155ENSG00000238158ENST00000454396ENST00000602854ENSG00000270504ENST00000603791CIL_0003IP_0002ENSMUSG00000021411ENSMUST00000021847ENSMUST00000053459ENSMUST00000125037ENSMUSG00000038246ENSMUST00000039605ENSMUSG00000086786ENSMUST00000154345
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000145945 ENST00000380272 2.960±0.00 4.684±0.00 0.905±0.00 7.556±3.09 3.316±2.25 4.790±3.41 3.281±1.90 3.869±2.07 2.011±0.91 1.153±0.21 5.324±2.41 5.203±4.06 2.545±0.60 8.574±5.97
ENST00000380274 N/A 1.233±0.00 0.445±0.00 2.080±0.00 1.950±0.00 N/A 1.375±0.00 1.693±0.00 1.584±0.00 0.885±0.00 1.849±0.00 3.034±1.06 0.722±0.48 N/A
ENSG00000168994 ENST00000380277 23.808±0.00 13.953±0.00 1.317±0.00 7.086±0.00 10.447±5.87 8.486±0.00 4.921±4.07 3.303±0.06 40.673±0.00 21.419±0.00 3.995±3.39 8.364±5.56 19.634±2.58 8.301±0.00
ENST00000380283 11.779±0.00 N/A N/A 3.500±2.37 13.093±12.18 11.115±0.00 2.249±1.86 8.534±1.69 10.020±3.77 0.830±0.00 1.657±0.52 6.083±3.58 17.936±4.99 0.827±0.00
ENST00000477592 N/A 3.742±0.00 0.841±0.00 N/A 1.205±0.00 1.662±0.00 N/A 1.997±0.16 26.196±0.00 9.334±6.77 2.137±1.82 5.320±2.24 18.366±4.03 2.557±0.27
ENST00000485986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000219992 ENST00000402155 0.054±0.00 N/A N/A 0.273±0.00 0.435±0.38 0.078±0.00 0.100±0.00 N/A N/A 0.813±0.50 N/A 0.210±0.09 0.717±0.00 0.111±0.04
ENSG00000238158 ENST00000454396 0.154±0.00 0.427±0.00 N/A 0.288±0.00 0.055±0.00 0.051±0.00 0.199±0.00 0.165±0.00 0.095±0.00 0.202±0.00 0.285±0.00 N/A N/A N/A
ENST00000602854 0.118±0.00 N/A N/A 0.152±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.619±0.00
ENSG00000270504 ENST00000603791 5.934±0.00 4.010±0.00 N/A N/A 3.555±2.88 N/A 1.896±0.00 2.480±0.00 N/A 4.215±0.00 N/A 1.779±0.97 8.768±2.59 0.938±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021411 ENSMUST00000021847 0.602±0.00 0.950±0.00 N/A N/A 4.585±0.00 N/A N/A 0.592±0.12 N/A N/A 0.227±0.00 0.810±0.00 N/A 0.565±0.00
ENSMUST00000053459 13.426±8.89 1.787±0.70 9.191±2.98 3.141±0.31 19.308±1.69 7.079±0.74 4.943±0.56 2.983±0.56 28.464±16.83 49.279±6.10 1.749±0.91 1.993±0.87 13.375±5.07 4.600±1.88
ENSMUST00000125037 0.685±0.00 1.741±0.71 N/A N/A 4.826±0.00 N/A 1.014±0.00 0.703±0.00 N/A N/A 0.436±0.00 1.866±0.64 N/A 0.411±0.00
ENSMUST00000152392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038246 ENSMUST00000039605 0.046±0.02 N/A 0.046±0.02 0.020±0.01 0.109±0.05 0.040±0.00 0.080±0.06 0.046±0.02 0.258±0.21 0.122±0.11 N/A N/A 0.645±0.27 130.036±32.24
ENSMUSG00000086786 ENSMUST00000154345 0.113±0.00 N/A N/A 0.008±0.00 0.125±0.00 0.175±0.04 0.035±0.00 0.081±0.00 0.048±0.03 N/A 0.037±0.01 0.018±0.00 0.037±0.00 9.718±2.81

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