C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145945-ENSG00000112739 CGP 9606 6:3849386-4064983
GeneTranscriptPositionBiotype
ENSG00000112739 (PRPF4B)
pre-mRNA processing factor 4B 		ENST00000337659 (PRPF4B-011) 4021326-4061907 protein_coding
ENST00000461612 (PRPF4B-009) 4062104-4064983 processed_transcript
ENST00000463634 (PRPF4B-002) 4040849-4064983 retained_intron
ENST00000466185 (PRPF4B-007) 4051982-4058890 processed_transcript
ENST00000480058 (PRPF4B-001) 4021267-4064982 nonsense_mediated_decay
ENST00000481109 (PRPF4B-003) 4037419-4064983 nonsense_mediated_decay
ENST00000490399 (PRPF4B-006) 4040848-4044226 processed_transcript
ENST00000490653 (PRPF4B-008) 4060982-4062069 processed_transcript
ENST00000494674 (PRPF4B-010) 4057160-4063556 processed_transcript
ENSG00000145945 (FAM50B)
family with sequence similarity 50, member B 		ENST00000380272 (FAM50B-001) 3849388-3851317 protein_coding
ENST00000380274 (FAM50B-002) 3849386-3851317 protein_coding
ENSG00000145975 (FAM217A)
family with sequence similarity 217, member A 		ENST00000274673 (FAM217A-001) 4068362-4079221 protein_coding
ENST00000380188 (FAM217A-003) 4068367-4087344 processed_transcript
ENST00000463904 (FAM217A-009) 4049434-4050518 processed_transcript
ENST00000469157 (FAM217A-008) 4050461-4087332 processed_transcript
ENST00000478714 (FAM217A-005) 4073458-4079221 processed_transcript
ENST00000492651 (FAM217A-007) 4073292-4079100 protein_coding
ENST00000498677 (FAM217A-006) 4069891-4079134 protein_coding
ENSG00000216657 (GLRX3P2)
glutaredoxin 3 pseudogene 2 		ENST00000405027 (GLRX3P2-001) 3978062-3979099 processed_pseudogene
ENSG00000217135 (RP1-140K8.3)
 ENST00000405321 (RP1-140K8.3-001) 3921847-3922146 processed_pseudogene
ENSG00000217566 (TDGF1P4)
teratocarcinoma-derived growth factor 1 pseudogene 4 		ENST00000401555 (TDGF1P4-001) 3941282-3941801 processed_pseudogene
ENSG00000218472 (RP1-140K8.2)
 ENST00000404787 (RP1-140K8.2-001) 3913922-3914292 processed_pseudogene
ENSG00000230648 (RP3-406P24.3)
 ENST00000415144 (RP3-406P24.3-001) 4018843-4021215 antisense
ENSG00000238158 (RP11-420L9.4)
 ENST00000454396 (RP11-420L9.4-001) 3831933-3855737 sense_overlapping
ENST00000602854 (RP11-420L9.4-003) 3831933-3833896 sense_overlapping
ENSG00000260604 (RP1-140K8.5)
 ENST00000566733 (RP1-140K8.5-001) 3904920-3911979 lincRNA
ENSG00000272248 (RP3-406P24.4)
 ENST00000606564 (RP3-406P24.4-001) 4018713-4019202 lincRNA
ENSG00000279926 (RP3-406P24.5)
 ENST00000623656 (RP3-406P24.5-001) 3982673-3984130 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0003IQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038246-ENSMUSG00000021413 CGP 10090 13:34734850-34902877
GeneTranscriptPositionBiotype
ENSMUSG00000021413 (Prpf4b)
PRP4 pre-mRNA processing factor 4 homolog B (yeast) 		ENSMUST00000077853 (Prpf4b-201) 34875494-34902877 protein_coding
ENSMUSG00000038246 (Fam50b)
family with sequence similarity 50, member B 		ENSMUST00000039605 (Fam50b-201) 34734850-34747613 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IQ_0001ENSG00000112739ENST00000337659ENST00000461612ENST00000463634ENST00000466185ENST00000480058ENST00000481109ENST00000490399ENST00000490653ENST00000494674ENSG00000145945ENST00000380272ENST00000380274ENSG00000145975ENST00000274673ENST00000380188ENST00000463904ENST00000469157ENST00000478714ENST00000492651ENST00000498677ENSG00000216657ENST00000405027ENSG00000217135ENST00000405321ENSG00000217566ENST00000401555ENSG00000218472ENST00000404787ENSG00000230648ENST00000415144ENSG00000238158ENST00000454396ENST00000602854ENSG00000260604ENST00000566733ENSG00000272248ENST00000606564ENSG00000279926ENST00000623656CIL_0003IQ_0002ENSMUSG00000021413ENSMUST00000077853ENSMUSG00000038246ENSMUST00000039605
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IQ_0001ENSG00000112739ENST00000337659ENST00000480058ENST00000481109ENSG00000145945ENST00000380272ENST00000380274ENSG00000145975ENST00000274673ENST00000380188ENSG00000216657ENST00000405027ENSG00000217135ENST00000405321ENSG00000217566ENST00000401555ENSG00000218472ENST00000404787ENSG00000230648ENST00000415144ENSG00000238158ENST00000454396ENST00000602854ENSG00000260604ENST00000566733ENSG00000272248ENST00000606564ENSG00000279926ENST00000623656CIL_0003IQ_0002ENSMUSG00000021413ENSMUST00000077853ENSMUSG00000038246ENSMUST00000039605
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112739 ENST00000337659 4.346±0.00 4.868±0.00 3.584±0.00 3.246±2.05 3.293±0.00 4.297±0.35 2.893±1.28 4.132±1.16 3.125±1.33 4.009±0.07 1.484±1.17 4.546±1.56 3.862±0.72 6.520±1.08
ENST00000461612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480058 N/A 0.912±0.00 1.078±0.00 1.281±0.00 2.483±0.96 2.073±0.91 1.204±0.00 2.795±1.43 1.268±0.19 2.656±0.00 0.615±0.02 4.291±1.51 0.875±0.17 2.444±0.63
ENST00000481109 N/A N/A N/A 1.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.172±0.00 N/A
ENST00000490399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145945 ENST00000380272 2.960±0.00 4.684±0.00 0.905±0.00 7.556±3.09 3.316±2.25 4.790±3.41 3.281±1.90 3.869±2.07 2.011±0.91 1.153±0.21 5.324±2.41 5.203±4.06 2.545±0.60 8.574±5.97
ENST00000380274 N/A 1.233±0.00 0.445±0.00 2.080±0.00 1.950±0.00 N/A 1.375±0.00 1.693±0.00 1.584±0.00 0.885±0.00 1.849±0.00 3.034±1.06 0.722±0.48 N/A
ENSG00000145975 ENST00000274673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.582±2.16
ENST00000380188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.371±0.00
ENST00000463904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000216657 ENST00000405027 0.023±0.00 0.048±0.00 0.100±0.00 N/A 0.128±0.12 N/A 0.067±0.04 0.149±0.14 0.211±0.19 N/A N/A 0.173±0.15 N/A 0.048±0.04
ENSG00000217135 ENST00000405321 N/A N/A N/A N/A N/A 1.132±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000217566 ENST00000401555 N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.215±0.00 0.112±0.02
ENSG00000218472 ENST00000404787 0.036±0.00 0.222±0.00 N/A 0.074±0.00 0.108±0.00 0.103±0.00 0.068±0.00 0.072±0.00 0.032±0.00 N/A 0.165±0.00 N/A N/A 0.098±0.00
ENSG00000230648 ENST00000415144 N/A 0.196±0.00 N/A N/A 0.101±0.00 0.184±0.00 3.231±2.85 N/A 0.896±0.00 N/A N/A 2.424±0.00 0.415±0.00 2.328±1.07
ENSG00000238158 ENST00000454396 0.154±0.00 0.427±0.00 N/A 0.288±0.00 0.055±0.00 0.051±0.00 0.199±0.00 0.165±0.00 0.095±0.00 0.202±0.00 0.285±0.00 N/A N/A N/A
ENST00000602854 0.118±0.00 N/A N/A 0.152±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.619±0.00
ENSG00000260604 ENST00000566733 0.146±0.00 0.060±0.00 0.014±0.00 0.037±0.01 0.061±0.03 0.025±0.00 2.116±0.00 0.037±0.00 0.122±0.11 0.018±0.01 0.125±0.08 0.188±0.15 0.111±0.04 0.085±0.02
ENSG00000272248 ENST00000606564 N/A 0.067±0.00 N/A 0.180±0.00 0.229±0.00 N/A 0.064±0.00 0.101±0.00 N/A 0.129±0.05 0.151±0.00 0.086±0.01 0.167±0.07 0.220±0.00
ENSG00000279926 ENST00000623656 0.049±0.00 0.285±0.00 0.803±0.00 0.398±0.09 0.205±0.00 0.353±0.13 0.142±0.03 0.352±0.12 0.258±0.17 0.615±0.40 0.112±0.00 0.400±0.28 0.023±0.00 0.303±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021413 ENSMUST00000077853 3.785±0.00 1.268±0.67 13.771±0.00 8.245±3.51 1.699±0.29 1.588±0.54 2.327±0.27 1.494±0.78 4.831±4.23 2.803±0.94 1.666±0.63 6.634±8.99 10.672±5.14 3.412±4.30
ENSMUSG00000038246 ENSMUST00000039605 0.046±0.02 N/A 0.046±0.02 0.020±0.01 0.109±0.05 0.040±0.00 0.080±0.06 0.046±0.02 0.258±0.21 0.122±0.11 N/A N/A 0.645±0.27 130.036±32.24

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