C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 44
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146083 RNF44 9606 - 5:176526697-176538025 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000274811 RNF44-001 176526697-176537420 protein_coding
  ENST00000504160 RNF44-003 176530937-176537296 nonsense_mediated_decay
  ENST00000504434 RNF44-004 176531882-176537880 retained_intron
  ENST00000506378 RNF44-007 176528939-176530645 protein_coding
  ENST00000508478 RNF44-005 176529488-176530610 retained_intron
  ENST00000509404 RNF44-008 176532480-176536330 processed_transcript
  ENST00000513029 RNF44-002 176528958-176538025 nonsense_mediated_decay
  ENST00000515051 RNF44-006 176529078-176529808 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274811ENST00000504160ENST00000508478ENST00000513029
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274811 6.208±0.00 13.608±0.00 1.238±0.00 5.908±0.00 4.104±0.00 4.180±0.00 3.761±0.00 8.693±0.00 0.816±0.00 10.083±0.00 1.621±0.00 8.266±0.00 5.576±4.35 4.765±0.00
ENST00000504160 N/A N/A N/A N/A 1.176±0.00 N/A N/A 0.422±0.00 0.712±0.00 0.475±0.00 N/A N/A N/A N/A
ENST00000508478 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.423±0.00 2.657±0.00 N/A N/A 13.930±0.00
ENST00000513029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.650±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0000OZ CIL_0000OZ_0002 CGP 5:176447628-176538025
CIL_0000OY CIL_0000OY_0002 CGP 5:176526697-176595974

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068582 rnf44 ring finger protein 44 protein_coding Danio_rerio
ENSMUSG00000034928 Rnf44 ring finger protein 44 protein_coding Mus_musculus

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