C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 44
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034928 Rnf44 10090 - 13:54679399-54693907 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037422 Rnf44-003 54679410-54693847 protein_coding
  ENSMUST00000122935 Rnf44-013 54683706-54688257 protein_coding
  ENSMUST00000123333 Rnf44-015 54684030-54687253 processed_transcript
  ENSMUST00000125871 Rnf44-001 54679401-54688094 protein_coding
  ENSMUST00000125927 Rnf44-007 54683610-54688200 protein_coding
  ENSMUST00000126717 Rnf44-006 54683052-54693846 protein_coding
  ENSMUST00000128038 Rnf44-016 54683485-54684407 retained_intron
  ENSMUST00000128257 Rnf44-005 54681565-54688259 protein_coding
  ENSMUST00000129881 Rnf44-010 54683128-54687654 protein_coding
  ENSMUST00000134177 Rnf44-008 54683760-54688274 protein_coding
  ENSMUST00000134862 Rnf44-002 54679410-54693907 protein_coding
  ENSMUST00000144052 Rnf44-009 54684041-54693850 processed_transcript
  ENSMUST00000145215 Rnf44-017 54682647-54684072 retained_intron
  ENSMUST00000145397 Rnf44-014 54683964-54693812 protein_coding
  ENSMUST00000146931 Rnf44-011 54683992-54687808 protein_coding
  ENSMUST00000150626 Rnf44-012 54684050-54688273 protein_coding
  ENSMUST00000150806 Rnf44-004 54679414-54688188 protein_coding
  ENSMUST00000177950 Rnf44-201 54679399-54687808 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037422ENSMUST00000125871ENSMUST00000128257ENSMUST00000134862ENSMUST00000145215ENSMUST00000150806ENSMUST00000177950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037422 16.576±1.97 32.765±4.49 14.253±0.99 8.721±0.77 22.416±10.63 21.807±5.47 8.736±1.68 18.903±4.59 7.965±2.71 18.586±5.85 3.106±0.60 16.376±3.99 21.089±10.82 1.502±0.00
ENSMUST00000125871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.894±0.00 N/A N/A 6.553±5.67
ENSMUST00000128257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.479±2.18 N/A 70.814±35.30
ENSMUST00000134862 7.273±2.67 29.687±9.38 10.623±0.46 16.636±7.08 15.371±12.65 35.285±11.97 4.585±1.81 13.944±3.60 7.601±2.75 20.949±1.50 2.216±1.06 22.310±8.86 9.591±3.57 20.160±3.87
ENSMUST00000145215 N/A N/A N/A N/A 21.479±0.00 41.600±0.00 N/A N/A N/A N/A N/A 58.650±5.16 N/A N/A
ENSMUST00000150806 3.756±0.00 18.183±0.00 N/A N/A N/A N/A 2.552±0.00 7.399±0.00 N/A N/A 1.877±0.86 6.781±2.57 15.129±0.00 N/A
ENSMUST00000177950 N/A N/A 4.457±0.27 13.701±5.21 N/A N/A N/A N/A 2.589±0.81 N/A 0.927±0.05 6.732±1.84 9.158±4.89 1.363±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0000OZ CIL_0000OZ_0003 CGP 13:54621784-54693907
CIL_0000OY CIL_0000OY_0003 CGP 13:54679399-54736662

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068582 rnf44 ring finger protein 44 protein_coding Danio_rerio
ENSG00000146083 RNF44 ring finger protein 44 protein_coding Homo_sapiens

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