C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 44
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274811 RNF44-001 ENSG00000146083 9606 - 5:176526697-176537420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274811
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274811 6.208±0.00 13.608±0.00 1.238±0.00 5.908±0.00 4.104±0.00 4.180±0.00 3.761±0.00 8.693±0.00 0.816±0.00 10.083±0.00 1.621±0.00 8.266±0.00 5.576±4.35 4.765±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0000OZ CIL_0000OZ_0002 CGP 5:176447628-176538025
CIL_0000OY CIL_0000OY_0002 CGP 5:176526697-176595974

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125871 Rnf44-001 protein_coding Mus_musculus 0 1832
ENSMUST00000177950 Rnf44-201 protein_coding Mus_musculus 0 1600
ENSMUST00000037422 Rnf44-003 protein_coding Mus_musculus 0 1600
ENSMUST00000150806 Rnf44-004 protein_coding Mus_musculus 0 1591
ENSMUST00000134862 Rnf44-002 protein_coding Mus_musculus 0 1591
ENSMUST00000128257 Rnf44-005 protein_coding Mus_musculus 0 1504
ENSMUST00000126717 Rnf44-006 protein_coding Mus_musculus 0 872
ENSMUST00000145215 Rnf44-017 retained_intron Mus_musculus 0 819
ENSMUST00000125927 Rnf44-007 protein_coding Mus_musculus 0 641
ENSMUST00000129881 Rnf44-010 protein_coding Mus_musculus 0 562
ENSMUST00000128038 Rnf44-016 retained_intron Mus_musculus 0 516
ENSMUST00000122935 Rnf44-013 protein_coding Mus_musculus 0 344
ENSMUST00000145397 Rnf44-014 protein_coding Mus_musculus 0 248
ENSMUST00000134177 Rnf44-008 protein_coding Mus_musculus 7e-40 171
ENSMUST00000146931 Rnf44-011 protein_coding Mus_musculus 2e-35 156
ENSDART00000099235 rnf44-001 protein_coding Danio_rerio 0.000000003 69

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