C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021972 Hmbox1 10090 - 14:64811600-64949871 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022544 Hmbox1-006 64811600-64949850 protein_coding
  ENSMUST00000067843 Hmbox1-201 64822218-64949847 protein_coding
  ENSMUST00000175744 Hmbox1-004 64825059-64949856 protein_coding
  ENSMUST00000175905 Hmbox1-002 64825339-64949847 protein_coding
  ENSMUST00000176128 Hmbox1-001 64822218-64949871 protein_coding
  ENSMUST00000176386 Hmbox1-003 64814626-64822296 processed_transcript
  ENSMUST00000176489 Hmbox1-007 64825306-64949847 protein_coding
  ENSMUST00000176657 Hmbox1-009 64883749-64949847 retained_intron
  ENSMUST00000176832 Hmbox1-008 64822814-64949632 protein_coding
  ENSMUST00000177326 Hmbox1-005 64823169-64903266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000022544ENSMUST00000176128ENSMUST00000176489
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000022544 4.596±0.00 3.935±0.07 8.830±0.00 7.258±0.28 8.353±0.00 4.278±0.00 6.547±0.42 2.238±0.66 15.238±0.00 7.623±1.57 6.269±3.87 2.692±0.00
ENSMUST00000176128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.132±0.00 2.249±0.00
ENSMUST00000176489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.767±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UV CIL_0002UV_0002 CGP 14:64652531-64949871

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018913 hmbox1b homeobox containing 1 b protein_coding Danio_rerio
ENSDARG00000027082 hmbox1a homeobox containing 1a protein_coding Danio_rerio
ENSG00000147421 HMBOX1 homeobox containing 1 protein_coding Homo_sapiens

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