C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ER lipid raft associated 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147475 ERLIN2 9606 + 8:37736599-37759101 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276461 ERLIN2-001 37736627-37759101 protein_coding
  ENST00000335171 ERLIN2-008 37736685-37746548 protein_coding
  ENST00000397228 ERLIN2-002 37736599-37746522 protein_coding
  ENST00000518526 ERLIN2-014 37736623-37751697 protein_coding
  ENST00000518586 ERLIN2-007 37736681-37746553 protein_coding
  ENST00000519638 ERLIN2-010 37737566-37754456 protein_coding
  ENST00000519872 ERLIN2-013 37736601-37740714 retained_intron
  ENST00000521644 ERLIN2-009 37736692-37754111 protein_coding
  ENST00000521993 ERLIN2-018 37740365-37750166 retained_intron
  ENST00000523107 ERLIN2-015 37737008-37744921 protein_coding
  ENST00000523887 ERLIN2-006 37736625-37746550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276461ENST00000518526ENST00000519638ENST00000521644
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276461 4.661±0.00 3.679±0.00 N/A 4.410±0.00 4.540±2.74 3.919±0.00 0.417±0.00 1.641±0.00 N/A 0.668±0.00 1.686±0.00 3.757±3.43 3.859±0.00 3.963±0.00
ENST00000518526 N/A N/A N/A 3.865±0.00 N/A N/A N/A N/A N/A N/A 2.241±0.00 N/A N/A N/A
ENST00000519638 N/A N/A 2.823±0.00 1.375±0.00 1.690±0.00 2.407±0.00 1.452±0.00 N/A 2.238±0.00 N/A N/A 2.739±0.44 4.581±0.00 5.557±0.00
ENST00000521644 N/A N/A N/A 5.539±0.00 N/A N/A N/A N/A 2.902±0.00 2.910±0.00 0.506±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0001 VISTA 8:37337791-37938686
CIL_0009C5 CIL_0009C5_0001 VISTA 8:37525567-38127835
CIL_0007QT CIL_0007QT_0001 VISTA 8:37525572-38127829
CIL_0002IU CIL_0002IU_0001 CGP 8:37695751-37759101
CIL_0002IV CIL_0002IV_0001 CGP 8:37736599-37779767

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0008219 IEA cell death
GO:0016021 IEA integral component of membrane
GO:0030433 IDA ER-associated ubiquitin-dependent protein catabolic process
GO:0043234 IDA protein complex
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086523 ERLIN2 ER lipid raft associated 2 (erlin2), mRNA protein_coding Danio_rerio
ENSDARG00000095968 erlin2 ER lipid raft associated 2 protein_coding Danio_rerio
ENSMUSG00000031483 Erlin2 ER lipid raft associated 2 protein_coding Mus_musculus

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