C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntabulin (syntaxin-interacting)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147642 SYBU 9606 - 8:109573978-109691791 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276646 SYBU-009 109574186-109644817 protein_coding
  ENST00000399066 SYBU-010 109574182-109643675 protein_coding
  ENST00000408889 SYBU-201 109574188-109681005 protein_coding
  ENST00000408908 SYBU-202 109574188-109648903 protein_coding
  ENST00000422135 SYBU-203 109574188-109691791 protein_coding
  ENST00000424158 SYBU-002 109574176-109648779 protein_coding
  ENST00000433638 SYBU-204 109574188-109648903 protein_coding
  ENST00000440310 SYBU-205 109574188-109645593 protein_coding
  ENST00000446070 SYBU-005 109574182-109648836 protein_coding
  ENST00000524720 SYBU-019 109618857-109648966 protein_coding
  ENST00000526302 SYBU-018 109642728-109648862 protein_coding
  ENST00000526736 SYBU-023 109585722-109607999 retained_intron
  ENST00000527600 SYBU-015 109642736-109680828 protein_coding
  ENST00000527664 SYBU-030 109579809-109680874 processed_transcript
  ENST00000527707 SYBU-027 109575975-109581058 processed_transcript
  ENST00000528045 SYBU-017 109579799-109648746 protein_coding
  ENST00000528331 SYBU-006 109574182-109648836 protein_coding
  ENST00000528569 SYBU-022 109579936-109643426 protein_coding
  ENST00000528647 SYBU-007 109574186-109645517 protein_coding
  ENST00000528716 SYBU-016 109618984-109680812 protein_coding
  ENST00000528735 SYBU-026 109579912-109586529 retained_intron
  ENST00000529175 SYBU-012 109574186-109580537 protein_coding
  ENST00000529190 SYBU-014 109579918-109691789 protein_coding
  ENST00000529690 SYBU-011 109574653-109608075 protein_coding
  ENST00000530841 SYBU-021 109586127-109645518 protein_coding
  ENST00000531230 SYBU-029 109586130-109680914 protein_coding
  ENST00000531284 SYBU-034 109618811-109644779 retained_intron
  ENST00000532189 SYBU-028 109579936-109680915 protein_coding
  ENST00000532594 SYBU-024 109577896-109608000 nonsense_mediated_decay
  ENST00000532779 SYBU-003 109574176-109691604 protein_coding
  ENST00000533065 SYBU-008 109574206-109644817 protein_coding
  ENST00000533171 SYBU-004 109574752-109681005 protein_coding
  ENST00000533394 SYBU-025 109575975-109603454 protein_coding
  ENST00000533821 SYBU-033 109586099-109680219 protein_coding
  ENST00000533895 SYBU-001 109573978-109648836 protein_coding
  ENST00000534184 SYBU-031 109618955-109680924 protein_coding
  ENST00000534501 SYBU-020 109586135-109645389 protein_coding
  ENST00000534578 SYBU-032 109642728-109691605 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276646ENST00000399066ENST00000422135ENST00000424158ENST00000527707ENST00000528647ENST00000528735ENST00000529175ENST00000529690ENST00000532779ENST00000533065ENST00000533171ENST00000533895
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276646 1.691±0.00 1.876±0.00 N/A 12.881±0.00 2.028±0.00 N/A 0.862±0.82 N/A 4.481±0.00 1.153±0.00 N/A 1.632±0.00 0.655±0.32 3.300±0.00
ENST00000399066 N/A 0.300±0.00 N/A N/A 0.205±0.00 N/A 0.037±0.00 N/A N/A 0.236±0.00 N/A N/A N/A N/A
ENST00000422135 N/A N/A N/A 1.839±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.809±0.00 N/A N/A
ENST00000527707 N/A N/A 0.417±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528647 N/A N/A N/A N/A N/A N/A 0.342±0.00 N/A N/A N/A N/A N/A 0.321±0.00 N/A
ENST00000528735 N/A N/A 0.660±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529175 N/A N/A N/A N/A 0.739±0.00 0.379±0.00 0.042±0.00 N/A N/A N/A N/A 2.172±1.34 N/A 0.400±0.00
ENST00000529690 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.607±0.00 0.399±0.00 3.420±0.00 0.473±0.03 0.513±0.00
ENST00000532779 N/A 0.658±0.00 N/A N/A N/A 3.037±0.00 N/A N/A N/A N/A N/A 1.352±0.00 0.185±0.00 N/A
ENST00000533065 2.625±0.00 0.530±0.00 N/A 9.588±0.00 4.101±0.00 3.035±0.00 N/A 6.388±0.00 4.885±0.00 0.931±0.00 0.615±0.00 2.675±2.37 0.539±0.30 N/A
ENST00000533171 N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.532±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060H CIL_00060H_0001 CGP 8:109539711-109691791
CIL_0005RR CIL_0005RR_0001 CGP 8:109573978-109975847

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0008017 IEA microtubule binding
GO:0016021 IEA integral component of membrane
GO:0017075 IEA syntaxin-1 binding
GO:0019894 IEA kinesin binding
GO:0031410 IEA cytoplasmic vesicle
GO:0061178 IEA regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0097433 IEA dense body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060112 sybu syntabulin (syntaxin-interacting) protein_coding Danio_rerio
ENSMUSG00000022340 Sybu syntabulin (syntaxin-interacting) protein_coding Mus_musculus

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