C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease P/MRP 30kDa subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148688 RPP30 9606 + 10:90871716-90908553 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277882 RPP30-004 90871983-90896392 protein_coding
  ENST00000371703 RPP30-001 90871716-90902190 protein_coding
  ENST00000413330 RPP30-201 90871952-90903262 protein_coding
  ENST00000414836 RPP30-006 90875558-90900766 protein_coding
  ENST00000466462 RPP30-007 90875604-90900847 processed_transcript
  ENST00000470933 RPP30-009 90896326-90908553 processed_transcript
  ENST00000479678 RPP30-010 90895668-90900766 processed_transcript
  ENST00000480406 RPP30-008 90894773-90905638 processed_transcript
  ENST00000487998 RPP30-005 90871973-90900762 retained_intron
  ENST00000489806 RPP30-003 90894775-90906065 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000277882ENST00000371703ENST00000413330ENST00000414836ENST00000466462ENST00000480406ENST00000487998ENST00000489806
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000277882 5.760±0.00 5.278±0.00 N/A N/A 6.813±0.00 4.544±0.00 2.333±0.00 N/A N/A N/A 5.801±0.00 N/A 4.457±0.00 12.431±0.00
ENST00000371703 0.823±0.00 N/A 0.441±0.00 N/A 0.708±0.00 0.720±0.00 0.518±0.00 N/A 0.395±0.00 0.574±0.00 0.584±0.00 0.736±0.17 1.215±0.58 N/A
ENST00000413330 N/A N/A N/A 4.585±0.00 6.473±0.00 3.852±0.00 2.812±0.00 3.132±2.18 2.181±0.89 2.872±0.20 1.515±0.00 4.514±0.98 5.540±1.13 3.858±0.00
ENST00000414836 2.925±0.00 8.276±0.00 N/A 4.406±0.00 7.523±0.00 4.897±0.00 3.401±0.00 7.820±0.00 2.716±0.00 5.105±0.00 2.880±0.00 4.300±0.02 5.743±0.00 15.754±0.00
ENST00000466462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.788±0.00 4.854±0.10 N/A
ENST00000480406 N/A N/A N/A N/A N/A N/A N/A 1.114±0.00 1.836±0.00 N/A N/A N/A N/A N/A
ENST00000487998 N/A N/A N/A 2.125±0.00 1.495±0.00 1.739±0.00 1.299±0.00 1.351±0.00 2.482±0.00 1.250±0.00 N/A 1.315±0.67 N/A 1.575±0.00
ENST00000489806 1.288±0.00 2.904±0.00 N/A 2.829±0.00 2.988±0.00 2.135±0.00 0.600±0.00 3.041±0.00 0.796±0.00 N/A 1.001±0.00 1.701±0.70 1.386±0.26 6.636±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BY CIL_0008BY_0001 VISTA 10:90630264-91230917
CIL_0005UK CIL_0005UK_0001 CGP 10:90740823-90908553
CIL_0001IP CIL_0001IP_0001 CGP 10:90871716-90921276

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004526 IEA ribonuclease P activity
GO:0004540 IEA ribonuclease activity
GO:0005634 TAS nucleus
GO:0005655 TAS nucleolar ribonuclease P complex
GO:0008033 IEA tRNA processing
GO:0044822 IDA poly(A) RNA binding
GO:0090501 IEA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027428 rpp30 ribonuclease P/MRP 30 subunit protein_coding Danio_rerio
ENSMUSG00000024800 Rpp30 ribonuclease P/MRP 30 subunit protein_coding Mus_musculus

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