C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease P/MRP 30kDa subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371703 RPP30-001 ENSG00000148688 9606 + 10:90871716-90902190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000371703
Transcript ID Adipose Bladder Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000371703 0.823±0.00 0.441±0.00 0.708±0.00 0.720±0.00 0.518±0.00 0.395±0.00 0.574±0.00 0.584±0.00 0.736±0.17 1.215±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BY CIL_0008BY_0001 VISTA 10:90630264-91230917
CIL_0005UK CIL_0005UK_0001 CGP 10:90740823-90908553
CIL_0001IP CIL_0001IP_0001 CGP 10:90871716-90921276

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004526 IEA ribonuclease P activity
GO:0004540 IEA ribonuclease activity
GO:0005634 TAS nucleus
GO:0005655 TAS nucleolar ribonuclease P complex
GO:0008033 IEA tRNA processing
GO:0044822 IDA poly(A) RNA binding
GO:0090501 TAS RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025714 Rpp30-201 protein_coding Mus_musculus 0 1122
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000001 73

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