C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: programmed cell death 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148843 PDCD11 9606 + 10:103396648-103446292 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369797 PDCD11-001 103396648-103446292 protein_coding
  ENST00000466959 PDCD11-005 103433993-103434702 retained_intron
  ENST00000471061 PDCD11-003 103403227-103405372 retained_intron
  ENST00000478543 PDCD11-004 103444313-103445724 retained_intron
  ENST00000490787 PDCD11-006 103424984-103425084 processed_transcript
  ENST00000493610 PDCD11-002 103396650-103405075 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369797ENST00000478543
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369797 3.490±0.00 3.349±0.00 1.132±0.00 1.225±0.98 2.281±1.50 3.336±1.41 2.335±0.00 2.942±2.70 2.768±0.00 2.226±1.37 5.798±5.02 7.245±3.72 4.612±0.63 13.028±0.94
ENST00000478543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.661±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039E CIL_00039E_0002 CGP 10:103389041-103446292
CIL_000661 CIL_000661_0001 CGP 10:103396648-103452402

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005829 IEA cytosol
GO:0006364 IEA rRNA processing
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0008134 IPI transcription factor binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052480 pdcd11 programmed cell death 11 protein_coding Danio_rerio
ENSMUSG00000025047 Pdcd11 programmed cell death 11 protein_coding Mus_musculus

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