C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00039E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000096003-ENSDARG00000052480 CGP 7955 1:49938536-49987572
GeneTranscriptPositionBiotype
ENSDARG00000018325 (taf5)
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor 		ENSDART00000015007 (taf5-001) 49921680-49938546 protein_coding
ENSDARG00000052480 (pdcd11)
programmed cell death 11 		ENSDART00000074342 (pdcd11-201) 49943845-49987559 protein_coding
ENSDART00000108733 (pdcd11-202) 49941437-49980388 protein_coding
ENSDART00000122961 (pdcd11-002) 49971140-49978724 processed_transcript
ENSDART00000124833 (pdcd11-001) 49941416-49987572 protein_coding
ENSDARG00000096003 (USMG5)
up-regulated during skeletal muscle growth 5 homolog (mouse) 		ENSDART00000150789 (USMG5-001) 49938536-49941291 protein_coding
ENSDART00000150842 (USMG5-002) 49938556-49941197 protein_coding
CIL_00039E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000173915-ENSG00000148843 CGP 9606 10:103389041-103446292
GeneTranscriptPositionBiotype
ENSG00000148835 (TAF5)
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa 		ENST00000369839 (TAF5-001) 103367967-103389065 protein_coding
ENSG00000148843 (PDCD11)
programmed cell death 11 		ENST00000369797 (PDCD11-001) 103396648-103446292 protein_coding
ENST00000466959 (PDCD11-005) 103433993-103434702 retained_intron
ENST00000471061 (PDCD11-003) 103403227-103405372 retained_intron
ENST00000478543 (PDCD11-004) 103444313-103445724 retained_intron
ENST00000490787 (PDCD11-006) 103424984-103425084 processed_transcript
ENST00000493610 (PDCD11-002) 103396650-103405075 nonsense_mediated_decay
ENSG00000173915 (USMG5)
up-regulated during skeletal muscle growth 5 homolog (mouse) 		ENST00000309579 (USMG5-002) 103389050-103396466 protein_coding
ENST00000337003 (USMG5-003) 103389050-103396466 protein_coding
ENST00000369811 (USMG5-005) 103389050-103396074 protein_coding
ENST00000369815 (USMG5-001) 103389050-103396441 protein_coding
ENST00000369825 (USMG5-004) 103389041-103396023 protein_coding
CIL_00039E_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071528-ENSMUSG00000025047 CGP 10090 19:47083471-47131143
GeneTranscriptPositionBiotype
ENSMUSG00000025047 (Pdcd11)
programmed cell death 11 		ENSMUST00000072141 (Pdcd11-201) 47090766-47131143 protein_coding
ENSMUSG00000025049 (Taf5)
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor 		ENSMUST00000026027 (Taf5-201) 47067748-47083479 protein_coding
ENSMUSG00000033033 (Calhm2)
calcium homeostasis modulator 2 		ENSMUST00000035822 (Calhm2-001) 47131823-47138294 protein_coding
ENSMUST00000140512 (Calhm2-002) 47105353-47138294 protein_coding
ENSMUSG00000071528 (Usmg5)
upregulated during skeletal muscle growth 5 		ENSMUST00000096014 (Usmg5-201) 47083471-47090625 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039E_0001ENSDARG00000018325ENSDART00000015007ENSDARG00000052480ENSDART00000074342ENSDART00000108733ENSDART00000122961ENSDART00000124833ENSDARG00000096003ENSDART00000150789ENSDART00000150842CIL_00039E_0002ENSG00000148835ENST00000369839ENSG00000148843ENST00000369797ENST00000466959ENST00000471061ENST00000478543ENST00000490787ENST00000493610ENSG00000173915ENST00000309579ENST00000337003ENST00000369811ENST00000369815ENST00000369825CIL_00039E_0003ENSMUSG00000025047ENSMUST00000072141ENSMUSG00000025049ENSMUST00000026027ENSMUSG00000033033ENSMUST00000035822ENSMUST00000140512ENSMUSG00000071528ENSMUST00000096014
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039E_0001ENSDARG00000018325ENSDART00000015007ENSDARG00000052480ENSDART00000074342ENSDART00000124833ENSDARG00000096003ENSDART00000150789ENSDART00000150842CIL_00039E_0002ENSG00000148835ENST00000369839ENSG00000148843ENST00000369797ENST00000478543ENSG00000173915ENST00000309579ENST00000337003ENST00000369811ENST00000369815CIL_00039E_0003ENSMUSG00000025047ENSMUST00000072141ENSMUSG00000025049ENSMUST00000026027ENSMUSG00000033033ENSMUST00000035822ENSMUSG00000071528ENSMUST00000096014
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018325 ENSDART00000015007 N/A N/A N/A 6.025±0.97 N/A N/A 3.179±0.78 6.949±2.48 0.698±0.00 N/A N/A N/A N/A N/A
ENSDARG00000052480 ENSDART00000074342 N/A N/A N/A 3.682±0.00 N/A N/A 2.431±0.62 3.712±0.55 0.594±0.00 N/A 1.738±0.00 N/A N/A N/A
ENSDART00000108733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000122961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000124833 N/A N/A N/A 3.565±1.35 N/A N/A 1.629±0.33 9.949±0.00 4.327±0.00 N/A 0.445±0.00 N/A N/A N/A
ENSDARG00000096003 ENSDART00000150789 N/A N/A N/A 76.149±88.60 N/A N/A 310.968±395.29 40.163±0.00 24.885±0.00 N/A 327.311±0.00 N/A N/A N/A
ENSDART00000150842 N/A N/A N/A N/A N/A N/A 12.900±0.00 0.267±0.07 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148835 ENST00000369839 1.362±0.00 1.266±0.00 N/A 1.762±0.00 1.094±0.00 1.601±0.42 N/A N/A 0.961±0.00 1.154±0.00 1.324±0.00 1.817±0.42 1.943±0.15 10.374±0.86
ENSG00000148843 ENST00000369797 3.490±0.00 3.349±0.00 1.132±0.00 1.225±0.98 2.281±1.50 3.336±1.41 2.335±0.00 2.942±2.70 2.768±0.00 2.226±1.37 5.798±5.02 7.245±3.72 4.612±0.63 13.028±0.94
ENST00000466959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.661±0.00 N/A N/A N/A
ENST00000490787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000173915 ENST00000309579 51.077±0.00 47.036±0.00 24.376±0.00 157.650±77.02 74.519±46.05 70.625±0.33 192.127±70.09 102.343±15.39 109.390±19.84 50.710±35.32 95.343±25.76 93.694±34.28 78.800±39.46 55.961±0.00
ENST00000337003 N/A N/A N/A 16.404±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 9.291±0.00 N/A
ENST00000369811 N/A N/A N/A N/A 3.796±0.00 5.879±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369815 N/A N/A N/A N/A N/A 10.340±0.00 N/A 17.265±0.00 N/A 12.454±0.00 8.860±0.00 13.032±6.52 N/A 19.077±2.71
ENST00000369825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025047 ENSMUST00000072141 4.998±3.16 4.015±0.95 5.394±0.53 5.201±0.86 3.207±1.29 3.006±0.91 2.269±0.53 3.405±1.34 4.660±2.25 5.224±0.39 2.088±0.42 7.055±2.54 9.035±3.62 3.471±0.72
ENSMUSG00000025049 ENSMUST00000026027 1.504±0.42 1.120±0.39 1.341±0.00 3.029±1.45 2.071±0.74 1.506±0.42 N/A 1.465±0.00 3.111±1.96 1.515±0.21 N/A 3.109±0.98 2.868±0.93 3.338±0.28
ENSMUSG00000033033 ENSMUST00000035822 6.454±2.71 5.870±0.45 7.695±0.69 N/A 10.009±3.41 6.009±0.64 2.386±0.39 2.309±0.09 1.530±0.00 11.616±2.60 N/A 6.826±0.40 2.154±0.00 1.638±0.28
ENSMUST00000140512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071528 ENSMUST00000096014 61.070±12.57 7.824±1.17 237.418±42.11 213.606±79.09 36.573±21.48 35.280±5.33 346.373±28.67 201.877±77.69 259.947±183.61 28.283±5.43 600.879±40.47 182.891±127.18 319.926±82.86 38.150±6.94

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