C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369797 PDCD11-001 ENSG00000148843 9606 + 10:103396648-103446292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369797 3.490±0.00 3.349±0.00 1.132±0.00 1.225±0.98 2.281±1.50 3.336±1.41 2.335±0.00 2.942±2.70 2.768±0.00 2.226±1.37 5.798±5.02 7.245±3.72 4.612±0.63 13.028±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039E CIL_00039E_0002 CGP 10:103389041-103446292
CIL_000661 CIL_000661_0001 CGP 10:103396648-103452402

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005829 IEA cytosol
GO:0006364 IEA rRNA processing
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0008134 IPI transcription factor binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072141 Pdcd11-201 protein_coding Mus_musculus 0 2861
ENSMUST00000140512 Calhm2-002 protein_coding Mus_musculus 0 255
ENSDART00000074342 pdcd11-201 protein_coding Danio_rerio 0 252
ENSDART00000124833 pdcd11-001 protein_coding Danio_rerio 0 252

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