C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin VIII
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149043 SYT8 9606 + 11:1828307-1837521 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341958 SYT8-004 1834804-1837521 protein_coding
  ENST00000381968 SYT8-002 1834444-1837521 protein_coding
  ENST00000381978 SYT8-008 1834590-1837521 protein_coding
  ENST00000417052 SYT8-010 1828543-1835926 protein_coding
  ENST00000424556 SYT8-015 1834871-1837521 nonsense_mediated_decay
  ENST00000430303 SYT8-011 1828307-1835934 protein_coding
  ENST00000464897 SYT8-003 1834476-1837521 retained_intron
  ENST00000475245 SYT8-013 1834572-1836104 retained_intron
  ENST00000479089 SYT8-006 1834310-1837521 retained_intron
  ENST00000479276 SYT8-007 1831087-1837521 retained_intron
  ENST00000482118 SYT8-005 1835106-1835582 retained_intron
  ENST00000483280 SYT8-012 1835560-1836418 processed_transcript
  ENST00000490707 SYT8-009 1833792-1837521 retained_intron
  ENST00000494431 SYT8-014 1836029-1836552 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000341958ENST00000381968ENST00000381978ENST00000417052ENST00000424556ENST00000464897ENST00000479089ENST00000479276ENST00000482118ENST00000483280ENST00000490707
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000341958 N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00
ENST00000381968 N/A N/A N/A N/A 0.033±0.00 N/A N/A 2.242±0.00 N/A 1.278±0.00 N/A
ENST00000381978 N/A N/A N/A 1.479±1.43 N/A 0.262±0.00 0.078±0.00 1.631±0.00 0.458±0.53 8.124±1.12 N/A
ENST00000417052 N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424556 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A N/A 0.211±0.00
ENST00000464897 N/A N/A N/A 1.670±0.00 N/A 0.324±0.00 N/A N/A N/A 1.413±0.00 N/A
ENST00000479089 N/A N/A N/A 0.727±0.00 N/A N/A N/A N/A 0.323±0.00 1.274±0.06 N/A
ENST00000479276 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 0.704±0.00 N/A
ENST00000482118 0.385±0.00 0.281±0.00 N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A
ENST00000483280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00
ENST00000490707 N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A 0.015±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0001 VISTA 11:1663842-2266142
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_00048K CIL_00048K_0001 CGP 11:1752752-1837521
CIL_00048J CIL_00048J_0001 CGP 11:1828307-1841680

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007340 IEA acrosome reaction
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031988 IEA membrane-bounded vesicle
GO:0048306 IEA calcium-dependent protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009564 syt8 synaptotagmin VIII protein_coding Danio_rerio
ENSMUSG00000031098 Syt8 synaptotagmin VIII protein_coding Mus_musculus

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