C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin VIII
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031098 Syt8 10090 + 7:142434850-142440396 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097939 Syt8-002 142435001-142440328 protein_coding
  ENSMUST00000105976 Syt8-001 142435001-142440328 protein_coding
  ENSMUST00000105977 Syt8-010 142438132-142438542 protein_coding
  ENSMUST00000118276 Syt8-003 142434977-142440396 protein_coding
  ENSMUST00000122393 Syt8-009 142436834-142440305 protein_coding
  ENSMUST00000124963 Syt8-006 142439015-142440312 retained_intron
  ENSMUST00000128481 Syt8-008 142434946-142438968 processed_transcript
  ENSMUST00000145964 Syt8-005 142438421-142439984 retained_intron
  ENSMUST00000148896 Syt8-004 142435001-142440328 retained_intron
  ENSMUST00000150192 Syt8-007 142434850-142439875 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097939ENSMUST00000105976ENSMUST00000105977ENSMUST00000118276ENSMUST00000122393ENSMUST00000124963ENSMUST00000145964ENSMUST00000148896ENSMUST00000150192
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097939 N/A N/A N/A N/A N/A 0.419±0.00 N/A 0.108±0.00 0.020±0.00 N/A N/A 0.253±0.00 0.336±0.00 N/A
ENSMUST00000105976 0.605±0.00 N/A N/A 0.030±0.00 N/A 0.437±0.03 0.027±0.00 N/A N/A N/A N/A 0.232±0.15 N/A N/A
ENSMUST00000105977 4.927±0.00 N/A N/A N/A 0.753±0.26 3.085±1.60 N/A 0.880±0.37 N/A N/A 0.229±0.00 2.340±1.36 N/A 0.422±0.19
ENSMUST00000118276 0.378±0.00 0.072±0.02 29.453±8.12 0.023±0.00 0.147±0.00 0.229±0.09 N/A 0.144±0.11 0.038±0.00 N/A 0.055±0.02 0.223±0.09 3.791±4.26 0.057±0.00
ENSMUST00000122393 N/A N/A N/A N/A 0.193±0.01 0.208±0.00 0.013±0.00 N/A N/A 0.117±0.00 N/A 0.212±0.06 N/A N/A
ENSMUST00000124963 N/A 0.085±0.04 N/A 0.031±0.01 0.426±0.05 0.650±0.20 N/A 0.061±0.00 0.235±0.18 N/A 0.144±0.00 0.536±0.40 0.839±0.00 0.041±0.00
ENSMUST00000145964 N/A N/A 57.217±17.75 0.026±0.01 0.251±0.10 N/A N/A 0.084±0.03 0.013±0.00 N/A 0.152±0.07 0.299±0.17 5.663±6.34 0.079±0.00
ENSMUST00000148896 N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A 0.115±0.12 0.309±0.21 0.297±0.00 0.307±0.00 5.180±0.00 0.086±0.00
ENSMUST00000150192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.02 0.141±0.00 7.012±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_00048K CIL_00048K_0002 CGP 7:142371148-142440396
CIL_00048J CIL_00048J_0002 CGP 7:142434850-142444410

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0007340 IDA acrosome reaction
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031988 IDA membrane-bounded vesicle
GO:0048306 IPI calcium-dependent protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009564 syt8 synaptotagmin VIII protein_coding Danio_rerio
ENSG00000149043 SYT8 synaptotagmin VIII protein_coding Homo_sapiens

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