C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 3, subunit M
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149100 EIF3M 9606 + 11:32583798-32606262 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323213 EIF3M-007 32583839-32596010 protein_coding
  ENST00000524711 EIF3M-005 32583848-32600793 nonsense_mediated_decay
  ENST00000524896 EIF3M-002 32583834-32602823 protein_coding
  ENST00000525054 EIF3M-012 32593769-32602302 retained_intron
  ENST00000525782 EIF3M-004 32583832-32601501 nonsense_mediated_decay
  ENST00000526267 EIF3M-013 32589586-32602377 protein_coding
  ENST00000530026 EIF3M-010 32583884-32594097 retained_intron
  ENST00000531120 EIF3M-001 32583825-32606262 protein_coding
  ENST00000531186 EIF3M-008 32583832-32588927 retained_intron
  ENST00000531921 EIF3M-003 32583798-32596015 nonsense_mediated_decay
  ENST00000532054 EIF3M-006 32583976-32588681 processed_transcript
  ENST00000532444 EIF3M-009 32583838-32593949 nonsense_mediated_decay
  ENST00000533439 EIF3M-011 32584069-32589603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323213ENST00000524896ENST00000525054ENST00000526267ENST00000530026ENST00000531120ENST00000531186ENST00000532054ENST00000532444
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323213 N/A N/A N/A 4.277±0.00 6.200±0.00 3.962±0.00 3.254±0.00 3.777±0.00 11.773±0.00 N/A 4.447±0.00 37.115±28.04 N/A N/A
ENST00000524896 N/A N/A 2.301±0.00 N/A N/A 2.219±0.00 1.412±0.00 1.623±0.00 N/A N/A 2.489±0.00 18.822±13.65 12.741±0.19 N/A
ENST00000525054 56.984±0.00 46.378±0.00 N/A 12.007±0.98 27.702±0.00 36.454±24.71 19.891±12.10 21.005±12.97 30.119±0.00 36.992±0.00 26.731±21.68 87.310±69.60 94.939±0.00 80.545±23.41
ENST00000526267 N/A N/A N/A 14.300±0.00 17.963±9.17 N/A N/A 14.476±0.00 N/A N/A N/A 51.706±5.26 N/A 34.687±0.00
ENST00000530026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.857±0.00 22.658±0.00 N/A
ENST00000531120 N/A 2.479±0.00 0.740±0.00 2.986±0.01 1.249±0.00 0.765±0.00 1.119±0.41 1.154±0.37 2.302±0.00 2.400±0.00 0.381±0.00 3.289±1.81 N/A N/A
ENST00000531186 N/A N/A N/A N/A N/A 7.375±0.00 N/A N/A N/A N/A N/A 12.641±0.00 N/A N/A
ENST00000532054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 81.474±0.00 46.672±0.00 56.376±0.00
ENST00000532444 61.548±0.00 52.803±0.00 4.660±0.00 24.165±0.00 40.532±0.00 70.358±0.00 31.060±0.00 24.456±18.97 24.491±0.00 43.873±0.00 51.380±0.00 71.401±6.83 27.163±8.80 49.436±18.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004RH CIL_0004RH_0002 CGP 11:32387775-32606262
CIL_0008SB CIL_0008SB_0001 VISTA 11:32486574-33087503

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0002183 IBA cytoplasmic translational initiation
GO:0003743 IC translation initiation factor activity
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005852 IDA eukaryotic translation initiation factor 3 complex
GO:0006412 IEA translation
GO:0006413 IC translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0031369 IEA translation initiation factor binding
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0071541 IEA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013931 eif3m eukaryotic translation initiation factor 3, subunit M protein_coding Danio_rerio
ENSMUSG00000027170 Eif3m eukaryotic translation initiation factor 3, subunit M protein_coding Mus_musculus

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