C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 22, type 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149654 CDH22 9606 - 20:46173733-46308498 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372262 CDH22-001 46173733-46251695 protein_coding
  ENST00000474438 CDH22-002 46209821-46220849 processed_transcript
  ENST00000537909 CDH22-201 46173734-46308498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000372262ENST00000474438ENST00000537909
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000372262 0.072±0.00 0.148±0.00 4.967±2.86 0.044±0.00 0.041±0.00 N/A N/A 0.130±0.00 0.202±0.00 0.295±0.32 0.060±0.01 0.957±0.54
ENST00000474438 N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A 0.144±0.00 0.350±0.11
ENST00000537909 N/A N/A N/A N/A N/A 0.519±0.00 0.242±0.00 N/A N/A N/A 0.192±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0001 CGP 20:46173733-46364458

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007420 IEA brain development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016339 IEA calcium-dependent cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075268 CABZ01034923.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000053166 Cdh22 cadherin 22 protein_coding Mus_musculus

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