C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 22
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053166 Cdh22 10090 - 2:165111507-165234853 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065438 Cdh22-001 165111507-165234853 protein_coding
  ENSMUST00000138643 Cdh22-002 165112327-165181459 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065438ENSMUST00000138643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065438 0.037±0.01 1.115±0.59 0.449±0.03 11.212±6.94 0.257±0.07 0.065±0.02 0.186±0.08 0.048±0.04 0.016±0.01 0.767±0.28 0.188±0.16 0.973±0.20 0.067±0.02 0.060±0.05
ENSMUST00000138643 0.014±0.00 0.574±0.00 0.115±0.02 6.570±6.61 0.052±0.01 0.062±0.03 0.170±0.10 0.024±0.01 0.003±0.00 0.168±0.00 0.085±0.05 0.616±0.30 0.051±0.03 0.082±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0002 CGP 2:165111507-165287869

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007420 IEA brain development
GO:0016021 IEA integral component of membrane
GO:0016339 IEA calcium-dependent cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075268 CABZ01034923.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000149654 CDH22 cadherin 22, type 2 protein_coding Homo_sapiens

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