C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 22, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372262 CDH22-001 ENSG00000149654 9606 - 20:46173733-46251695 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungMuscleOvaryPlacentaTestisENST00000372262
Transcript ID Adipose Adrenal Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENST00000372262 0.072±0.00 0.148±0.00 4.967±2.86 0.044±0.00 0.041±0.00 0.130±0.00 0.202±0.00 0.295±0.32 0.060±0.01 0.957±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0001 CGP 20:46173733-46364458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065438 Cdh22-001 protein_coding Mus_musculus 0 2484
ENSMUST00000138643 Cdh22-002 nonsense_mediated_decay Mus_musculus 0 1312
ENSMUST00000075444 Ddn-201 protein_coding Mus_musculus 0.000000000000002 90

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