C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LY6/PLAUR domain containing 6B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000150556 LYPD6B 9606 + 2:149038107-149215262 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000280115 LYPD6B-201 149204525-149215258 protein_coding
  ENST00000409029 LYPD6B-003 149077522-149215262 protein_coding
  ENST00000409642 LYPD6B-001 149038467-149215262 protein_coding
  ENST00000409876 LYPD6B-002 149038718-149215256 protein_coding
  ENST00000437627 LYPD6B-005 149118181-149200708 nonsense_mediated_decay
  ENST00000442722 LYPD6B-006 149119103-149208367 nonsense_mediated_decay
  ENST00000450639 LYPD6B-008 149118196-149187635 protein_coding
  ENST00000473800 LYPD6B-007 149038107-149101583 processed_transcript
  ENST00000473975 LYPD6B-010 149118174-149205322 processed_transcript
  ENST00000480545 LYPD6B-004 149118174-149131588 processed_transcript
  ENST00000498249 LYPD6B-009 149142036-149215262 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000280115ENST00000409029ENST00000409642ENST00000409876ENST00000437627ENST00000450639ENST00000473800ENST00000480545ENST00000498249
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000280115 0.246±0.00 N/A N/A 0.306±0.23 0.368±0.00 0.038±0.00 0.036±0.00 1.106±1.05 0.188±0.00 0.593±0.00 6.416±6.52 1.397±0.05 7.522±4.65
ENST00000409029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A
ENST00000409642 N/A 0.080±0.00 N/A 0.177±0.00 N/A N/A N/A 1.418±0.00 N/A N/A 5.257±0.00 0.233±0.00 4.068±0.00
ENST00000409876 N/A N/A 0.409±0.00 0.453±0.00 0.333±0.00 N/A N/A 0.777±0.00 0.698±0.00 1.033±0.00 2.595±1.14 N/A 5.544±0.00
ENST00000437627 N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A
ENST00000450639 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.095±0.00 N/A N/A N/A
ENST00000473800 N/A N/A 0.821±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480545 N/A N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A
ENST00000498249 N/A 0.095±0.00 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MF CIL_0006MF_0001 CGP 2:148875250-149215262
CIL_0006MG CIL_0006MG_0001 CGP 2:149038107-149474148

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077643 lypd6b LY6/PLAUR domain containing 6B protein_coding Danio_rerio
ENSMUSG00000026765 Lypd6b LY6/PLAUR domain containing 6B protein_coding Mus_musculus

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