C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151148 UBE3B 9606 + 12:109477402-109536705 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340074 UBE3B-005 109477652-109490722 protein_coding
  ENST00000342494 UBE3B-001 109477642-109536702 protein_coding
  ENST00000434735 UBE3B-002 109477402-109536705 protein_coding
  ENST00000449510 UBE3B-008 109477653-109534654 nonsense_mediated_decay
  ENST00000535900 UBE3B-014 109501425-109511315 processed_transcript
  ENST00000536398 UBE3B-004 109477635-109490722 protein_coding
  ENST00000537063 UBE3B-007 109477655-109492737 protein_coding
  ENST00000538070 UBE3B-010 109519556-109535071 retained_intron
  ENST00000539584 UBE3B-012 109508450-109524095 retained_intron
  ENST00000539599 UBE3B-006 109477638-109526404 protein_coding
  ENST00000539843 UBE3B-011 109477628-109484021 retained_intron
  ENST00000540230 UBE3B-003 109477653-109491149 protein_coding
  ENST00000605142 UBE3B-009 109529930-109534538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342494ENST00000434735ENST00000449510ENST00000539599
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342494 4.690±0.00 N/A 1.500±0.00 4.816±0.11 4.128±1.26 4.960±0.42 6.132±4.13 4.767±1.26 3.473±1.28 2.889±0.00 5.361±1.68 5.478±2.72 5.259±1.16 4.087±0.46
ENST00000434735 N/A 4.163±0.00 1.986±0.00 N/A N/A N/A 0.724±0.00 4.441±0.00 1.683±0.00 5.074±0.00 8.703±0.00 3.000±0.46 2.404±0.00 4.577±1.17
ENST00000449510 N/A N/A 1.810±0.00 N/A N/A N/A 1.194±0.00 N/A N/A 2.580±0.00 N/A 2.440±0.00 N/A N/A
ENST00000539599 N/A N/A N/A N/A N/A 4.114±0.00 N/A N/A N/A N/A 7.483±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GP CIL_0001GP_0002 CGP 12:109347903-109477544
CIL_0001GM CIL_0001GM_0002 CGP 12:109448656-109536705
CIL_000401 CIL_000401_0001 CGP 12:109477402-109573874

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061960 ube3b ubiquitin protein ligase E3B protein_coding Danio_rerio
ENSMUSG00000029577 Ube3b ubiquitin protein ligase E3B protein_coding Mus_musculus

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