C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342494 UBE3B-001 ENSG00000151148 9606 + 12:109477642-109536702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342494
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342494 4.690±0.00 1.500±0.00 4.816±0.11 4.128±1.26 4.960±0.42 6.132±4.13 4.767±1.26 3.473±1.28 2.889±0.00 5.361±1.68 5.478±2.72 5.259±1.16 4.087±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GP CIL_0001GP_0002 CGP 12:109347903-109477544
CIL_0001GM CIL_0001GM_0002 CGP 12:109448656-109536705
CIL_000401 CIL_000401_0001 CGP 12:109477402-109573874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA:IBA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074002 Ube3b-001 protein_coding Mus_musculus 0 3493
ENSMUST00000130169 Ube3b-002 nonsense_mediated_decay Mus_musculus 0 2808
ENSDART00000088968 ube3b-001 protein_coding Danio_rerio 0 1328
ENSMUST00000150630 Ube3b-004 processed_transcript Mus_musculus 0 625

Loading