C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029577 Ube3b 10090 + 5:114380628-114421168 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074002 Ube3b-001 114380628-114421168 protein_coding
  ENSMUST00000130169 Ube3b-002 114380826-114421168 nonsense_mediated_decay
  ENSMUST00000150630 Ube3b-004 114402725-114411135 processed_transcript
  ENSMUST00000151809 Ube3b-003 114380833-114392159 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074002ENSMUST00000130169ENSMUST00000150630
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074002 24.329±5.52 41.290±10.09 10.795±0.68 14.267±5.42 24.370±4.84 27.685±8.63 20.870±1.47 18.131±2.76 10.680±3.59 25.837±3.31 39.162±3.01 28.139±9.99 9.819±4.94 42.768±19.79
ENSMUST00000130169 N/A 13.490±0.00 4.455±0.00 5.982±0.06 N/A N/A N/A N/A 2.891±1.96 N/A 7.311±2.19 4.545±0.00 3.410±0.89 5.129±0.00
ENSMUST00000150630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.011±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GM CIL_0001GM_0003 CGP 5:114363567-114421168
CIL_000401 CIL_000401_0002 CGP 5:114380628-114444059

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061960 ube3b ubiquitin protein ligase E3B protein_coding Danio_rerio
ENSG00000151148 UBE3B ubiquitin protein ligase E3B protein_coding Homo_sapiens

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