C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151445 VIPAS39 9606 - 14:77426675-77457952 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327028 VIPAS39-201 77426675-77457561 protein_coding
  ENST00000343765 VIPAS39-005 77426675-77457561 protein_coding
  ENST00000448935 VIPAS39-002 77427420-77457586 protein_coding
  ENST00000553576 VIPAS39-011 77435171-77443161 retained_intron
  ENST00000553691 VIPAS39-009 77437808-77453384 retained_intron
  ENST00000553888 VIPAS39-001 77426675-77457605 protein_coding
  ENST00000555854 VIPAS39-010 77440260-77444290 retained_intron
  ENST00000556412 VIPAS39-004 77427514-77457565 protein_coding
  ENST00000556909 VIPAS39-006 77457280-77457952 processed_transcript
  ENST00000557466 VIPAS39-007 77453359-77457572 protein_coding
  ENST00000557658 VIPAS39-003 77426682-77457640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000557658
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000557658 5.472±0.00 5.941±0.00 1.477±0.00 4.511±0.00 4.875±2.35 7.413±4.89 3.237±2.52 8.996±0.00 3.557±0.45 3.361±0.00 4.028±2.39 6.522±2.90 12.542±0.99 13.345±1.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043O CIL_00043O_0001 CGP 14:77426675-77469474

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006886 IMP intracellular protein transport
GO:0007283 IEA spermatogenesis
GO:0008333 IMP endosome to lysosome transport
GO:0030154 IEA cell differentiation
GO:0030897 IDA HOPS complex
GO:0031410 IEA cytoplasmic vesicle
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030976 vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein_coding Danio_rerio
ENSMUSG00000021038 Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein_coding Mus_musculus

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