C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021038 Vipas39 10090 - 12:87238875-87266286 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021426 Vipas39-201 87238875-87264244 protein_coding
  ENSMUST00000072744 Vipas39-202 87238875-87266286 protein_coding
  ENSMUST00000179379 Vipas39-203 87238875-87266286 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000021426ENSMUST00000072744ENSMUST00000179379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000021426 N/A N/A N/A N/A 1.283±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000072744 11.194±1.36 6.711±2.80 14.467±0.35 22.427±0.56 11.679±2.55 12.331±1.59 8.161±1.09 16.045±3.63 5.000±0.58 9.143±1.17 2.569±0.53 15.075±5.02 10.998±4.53
ENSMUST00000179379 N/A N/A N/A 9.968±0.00 N/A N/A N/A N/A N/A N/A 0.447±0.00 5.979±2.73 10.397±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043O CIL_00043O_0002 CGP 12:87238875-87273997

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006886 IEA intracellular protein transport
GO:0007283 IEA spermatogenesis
GO:0008333 IEA endosome to lysosome transport
GO:0030154 IEA cell differentiation
GO:0030897 IEA HOPS complex
GO:0031410 IEA cytoplasmic vesicle
GO:0055037 IEA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030976 vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein_coding Danio_rerio
ENSG00000151445 VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein_coding Homo_sapiens

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