C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557658 VIPAS39-003 ENSG00000151445 9606 - 14:77426682-77457640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000557658
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000557658 5.472±0.00 5.941±0.00 1.477±0.00 4.511±0.00 4.875±2.35 7.413±4.89 3.237±2.52 8.996±0.00 3.557±0.45 3.361±0.00 4.028±2.39 6.522±2.90 12.542±0.99 13.345±1.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043O CIL_00043O_0001 CGP 14:77426675-77469474

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006886 IMP intracellular protein transport
GO:0007283 IEA spermatogenesis
GO:0008333 IMP endosome to lysosome transport
GO:0030154 IEA cell differentiation
GO:0030897 IDA HOPS complex
GO:0031410 IEA cytoplasmic vesicle
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072744 Vipas39-202 protein_coding Mus_musculus 0 1901
ENSMUST00000021426 Vipas39-201 protein_coding Mus_musculus 0 1216
ENSMUST00000179379 Vipas39-203 protein_coding Mus_musculus 0 1216

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