C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392455 CCDC50-001 ENSG00000152492 9606 + 3:191329077-191398670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392455
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392455 9.412±0.00 12.942±0.00 1.189±0.00 4.055±1.01 7.960±1.51 3.387±1.78 3.257±1.16 3.672±1.22 4.747±2.07 4.590±1.34 1.011±0.76 6.413±2.79 3.342±0.78 4.289±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DK CIL_0000DK_0001 CGP 3:191199241-191330536
CIL_0000DS CIL_0000DS_0001 CGP 3:191267168-191398670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0031625 IPI ubiquitin protein ligase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100026 Ccdc50-001 protein_coding Mus_musculus 0 887
ENSMUST00000039443 Ccdc50-002 protein_coding Mus_musculus 0 811
ENSMUST00000143823 Ccdc50-004 protein_coding Mus_musculus 0 776
ENSMUST00000096127 Ccdc50-003 protein_coding Mus_musculus 0 623
ENSMUST00000111336 Sdhc-001 protein_coding Mus_musculus 0.00001 58

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