C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392456 CCDC50-002 ENSG00000152492 9606 + 3:191329085-191392175 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392456
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392456 22.605±0.00 3.655±0.00 7.943±4.28 12.338±5.71 5.430±3.66 8.361±2.64 9.415±6.36 11.750±8.39 8.397±0.00 7.656±4.47 9.568±2.31 16.638±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DK CIL_0000DK_0001 CGP 3:191199241-191330536
CIL_0000DS CIL_0000DS_0001 CGP 3:191267168-191398670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0031625 IPI ubiquitin protein ligase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096127 Ccdc50-003 protein_coding Mus_musculus 0 490
ENSMUST00000039443 Ccdc50-002 protein_coding Mus_musculus 0 490
ENSMUST00000100026 Ccdc50-001 protein_coding Mus_musculus 0 490
ENSMUST00000143823 Ccdc50-004 protein_coding Mus_musculus 0 466

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