C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: geranylgeranyl diphosphate synthase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000152904 GGPS1 9606 + 1:235327350-235344532 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000282841 GGPS1-001 235328570-235344532 protein_coding
  ENST00000358966 GGPS1-201 235328438-235344525 protein_coding
  ENST00000391855 GGPS1-002 235328571-235343138 protein_coding
  ENST00000471812 GGPS1-005 235328399-235342596 protein_coding
  ENST00000482013 GGPS1-007 235328573-235329984 processed_transcript
  ENST00000488594 GGPS1-003 235327350-235343093 protein_coding
  ENST00000489692 GGPS1-006 235328590-235329429 processed_transcript
  ENST00000497327 GGPS1-008 235329029-235342559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000282841ENST00000358966ENST00000391855ENST00000488594
Transcript ID Adipose Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000282841 N/A N/A 7.577±0.00 2.916±1.67 N/A N/A N/A 12.863±0.00 2.970±0.22 N/A
ENST00000358966 N/A N/A N/A N/A N/A N/A 0.807±0.00 N/A N/A N/A
ENST00000391855 N/A 7.877±0.00 N/A 9.035±0.00 4.612±0.00 4.307±0.00 1.522±0.00 N/A 7.117±0.00 N/A
ENST00000488594 15.259±0.00 16.122±0.00 14.050±0.00 N/A N/A N/A 9.331±0.00 N/A 6.628±0.00 29.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L1 CIL_0000L1_0002 CGP 1:235131634-235344532

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004161 IEA dimethylallyltranstransferase activity
GO:0004311 IDA farnesyltranstransferase activity
GO:0004337 IEA geranyltranstransferase activity
GO:0005829 TAS cytosol
GO:0006695 TAS cholesterol biosynthetic process
GO:0006720 IDA isoprenoid metabolic process
GO:0008299 IEA isoprenoid biosynthetic process
GO:0033384 IEA geranyl diphosphate biosynthetic process
GO:0033386 IEA geranylgeranyl diphosphate biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0045337 IEA farnesyl diphosphate biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023627 ggps1 geranylgeranyl diphosphate synthase 1 protein_coding Danio_rerio
ENSMUSG00000021302 Ggps1 geranylgeranyl diphosphate synthase 1 protein_coding Mus_musculus

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