C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: geranylgeranyl diphosphate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000282841 GGPS1-001 ENSG00000152904 9606 + 1:235328570-235344532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartOvaryPlacentaENST00000282841
Transcript ID Breast Heart Ovary Placenta
ENST00000282841 7.577±0.00 2.916±1.67 12.863±0.00 2.970±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L1 CIL_0000L1_0002 CGP 1:235131634-235344532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004161 IEA dimethylallyltranstransferase activity
GO:0004311 IDA farnesyltranstransferase activity
GO:0004337 IEA geranyltranstransferase activity
GO:0005829 TAS cytosol
GO:0006695 TAS cholesterol biosynthetic process
GO:0006720 IDA isoprenoid metabolic process
GO:0008299 IEA isoprenoid biosynthetic process
GO:0033384 IEA geranyl diphosphate biosynthetic process
GO:0033386 IEA geranylgeranyl diphosphate biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0045337 IEA farnesyl diphosphate biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170957 Ggps1-201 protein_coding Mus_musculus 0 1219

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