C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SREK1-interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153006 SREK1IP1 9606 - 5:64718144-64768685 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000495198 SREK1IP1-004 64727671-64768619 retained_intron
  ENST00000506252 SREK1IP1-002 64741136-64768649 processed_transcript
  ENST00000510616 SREK1IP1-003 64741057-64768627 processed_transcript
  ENST00000513458 SREK1IP1-001 64718144-64768685 protein_coding
  ENST00000622404 SREK1IP1-201 64723312-64768599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000495198ENST00000510616ENST00000513458ENST00000622404
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000495198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.135±0.00 3.967±0.00 9.959±0.00
ENST00000510616 N/A N/A N/A N/A N/A N/A N/A 7.370±0.00 N/A N/A N/A 27.366±0.00 N/A 35.060±0.00
ENST00000513458 1.596±0.00 2.353±0.00 0.435±0.00 1.395±0.49 1.840±1.02 1.596±0.77 1.165±0.61 1.558±0.87 0.965±0.02 1.017±0.15 0.772±0.41 1.466±0.24 2.191±0.96 2.236±0.35
ENST00000622404 2.803±0.00 5.028±0.00 0.283±0.00 1.668±0.00 3.257±0.00 4.991±0.00 N/A 1.828±0.00 1.036±0.00 3.059±0.00 N/A 2.443±0.00 1.989±0.00 7.124±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FV CIL_0007FV_0002 CGP 5:64718144-65018763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043728 srek1ip1 SREK1-interacting protein 1 protein_coding Danio_rerio
ENSMUSG00000021716 Srek1ip1 splicing regulatory glutamine/lysine-rich protein 1interacting protein 1 protein_coding Mus_musculus

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