C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SREK1-interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000513458 SREK1IP1-001 ENSG00000153006 9606 - 5:64718144-64768685 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000513458
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000513458 1.596±0.00 2.353±0.00 0.435±0.00 1.395±0.49 1.840±1.02 1.596±0.77 1.165±0.61 1.558±0.87 0.965±0.02 1.017±0.15 0.772±0.41 1.466±0.24 2.191±0.96 2.236±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FV CIL_0007FV_0002 CGP 5:64718144-65018763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022230 Srek1ip1-001 protein_coding Mus_musculus 0 545
ENSMUST00000156105 Srek1ip1-002 nonsense_mediated_decay Mus_musculus 0 235
ENSMUST00000147061 Srek1ip1-005 retained_intron Mus_musculus 0 211
ENSMUST00000145661 Srek1ip1-003 processed_transcript Mus_musculus 2e-38 167

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