C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153922 CHD1 9606 - 5:98853985-98928957 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284049 CHD1-201 98855204-98926534 protein_coding
  ENST00000414220 CHD1-010 98869479-98870716 retained_intron
  ENST00000505657 CHD1-006 98856567-98868629 nonsense_mediated_decay
  ENST00000505982 CHD1-011 98883134-98886231 retained_intron
  ENST00000508756 CHD1-009 98868930-98872180 retained_intron
  ENST00000511067 CHD1-008 98863408-98870790 protein_coding
  ENST00000511628 CHD1-004 98881247-98888186 retained_intron
  ENST00000512392 CHD1-003 98855732-98860682 retained_intron
  ENST00000512844 CHD1-005 98856283-98868539 nonsense_mediated_decay
  ENST00000513064 CHD1-007 98856425-98858664 retained_intron
  ENST00000514344 CHD1-002 98855204-98872557 retained_intron
  ENST00000614616 CHD1-001 98853985-98928957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284049ENST00000511067ENST00000511628ENST00000512844ENST00000514344ENST00000614616
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284049 3.915±0.00 3.313±0.00 0.995±0.00 1.704±0.40 2.233±0.75 3.804±1.20 1.828±0.55 1.768±0.29 2.772±1.62 3.965±0.16 0.968±0.41 3.540±1.57 1.633±1.17 6.085±2.17
ENST00000511067 N/A N/A N/A N/A N/A 5.739±0.00 N/A N/A N/A N/A N/A N/A N/A 9.297±0.35
ENST00000511628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.300±0.00 N/A N/A N/A
ENST00000512844 N/A 8.646±0.00 N/A N/A N/A N/A N/A N/A N/A 11.324±0.00 3.206±0.00 N/A N/A N/A
ENST00000514344 N/A 2.633±0.00 N/A N/A 1.959±0.00 N/A N/A 2.075±0.06 0.912±0.00 2.728±0.00 0.511±0.00 4.085±0.00 0.739±0.28 N/A
ENST00000614616 1.050±0.00 N/A N/A 0.345±0.08 1.183±0.17 0.881±0.13 0.477±0.00 0.496±0.00 N/A 1.386±0.00 N/A 1.975±0.00 0.340±0.13 1.140±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004003 TAS ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0032508 TAS DNA duplex unwinding
GO:0035064 IDA methylated histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014878 CHD1 chromodomain helicase DNA binding protein 1 protein_coding Danio_rerio
ENSMUSG00000023852 Chd1 chromodomain helicase DNA binding protein 1 protein_coding Mus_musculus

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