C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000614616 CHD1-001 ENSG00000153922 9606 - 5:98853985-98928957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000614616
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000614616 1.050±0.00 0.345±0.08 1.183±0.17 0.881±0.13 0.477±0.00 0.496±0.00 1.386±0.00 1.975±0.00 0.340±0.13 1.140±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004003 TAS ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0032508 TAS DNA duplex unwinding
GO:0035064 IDA methylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024627 Chd1-001 protein_coding Mus_musculus 0 7559
ENSMUST00000173311 Chd1-003 protein_coding Mus_musculus 0 4060
ENSMUST00000174461 Chd1-002 protein_coding Mus_musculus 0 1938
ENSMUST00000173159 Chd1-004 processed_transcript Mus_musculus 0 989
ENSMUST00000173040 Chd1-006 nonsense_mediated_decay Mus_musculus 0 632

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