C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000284049 CHD1-201 ENSG00000153922 9606 - 5:98855204-98926534 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284049 3.915±0.00 3.313±0.00 0.995±0.00 1.704±0.40 2.233±0.75 3.804±1.20 1.828±0.55 1.768±0.29 2.772±1.62 3.965±0.16 0.968±0.41 3.540±1.57 1.633±1.17 6.085±2.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004003 TAS ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0032508 TAS DNA duplex unwinding
GO:0035064 IDA methylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024627 Chd1-001 protein_coding Mus_musculus 0 7489
ENSMUST00000173311 Chd1-003 protein_coding Mus_musculus 0 4048
ENSMUST00000174461 Chd1-002 protein_coding Mus_musculus 0 1938
ENSMUST00000173159 Chd1-004 processed_transcript Mus_musculus 0 977
ENSMUST00000173040 Chd1-006 nonsense_mediated_decay Mus_musculus 0 632

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