C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, alpha 2/delta subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153956 CACNA2D1 9606 - 7:81946444-82443798 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356253 CACNA2D1-201 81950102-82443715 protein_coding
  ENST00000356860 CACNA2D1-001 81946444-82443798 protein_coding
  ENST00000423588 CACNA2D1-002 82050336-82443716 protein_coding
  ENST00000443883 CACNA2D1-005 81969881-82005790 protein_coding
  ENST00000461275 CACNA2D1-011 82050935-82084836 processed_transcript
  ENST00000464354 CACNA2D1-004 82005447-82033072 processed_transcript
  ENST00000466806 CACNA2D1-006 82005331-82012251 retained_intron
  ENST00000469297 CACNA2D1-009 81961894-81964282 retained_intron
  ENST00000475237 CACNA2D1-010 82007662-82032901 retained_intron
  ENST00000484706 CACNA2D1-003 82117044-82343236 processed_transcript
  ENST00000486539 CACNA2D1-008 81967165-81971089 retained_intron
  ENST00000492734 CACNA2D1-007 82012043-82038235 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356253ENST00000356860ENST00000423588ENST00000443883
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356253 N/A 2.539±0.00 N/A N/A N/A N/A 1.823±0.00 N/A 10.408±0.00 N/A N/A N/A
ENST00000356860 1.290±0.00 6.453±1.29 7.174±5.81 2.119±0.85 1.485±0.00 0.782±0.52 0.483±0.34 0.445±0.00 N/A 0.671±0.38 0.205±0.00 0.334±0.00
ENST00000423588 N/A N/A N/A N/A 4.622±0.00 N/A 7.873±0.00 N/A 16.667±0.00 N/A N/A N/A
ENST00000443883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052I CIL_00052I_0003 CGP 7:81699006-82443798

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006816 IDA calcium ion transport
GO:0016529 IEA sarcoplasmic reticulum
GO:0030315 IEA T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0051924 IDA regulation of calcium ion transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014804 cacna2d1a calcium channel, voltage-dependent, alpha 2/delta subunit 1a protein_coding Danio_rerio
ENSDARG00000040406 CACNA2D1 (2 of 3) calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein_coding Danio_rerio
ENSDARG00000073752 CACNA2D1 (3 of 3) calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein_coding Danio_rerio
ENSMUSG00000040118 Cacna2d1 calcium channel, voltage-dependent, alpha2/delta subunit 1 protein_coding Mus_musculus

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