C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, alpha2/delta subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040118 Cacna2d1 10090 + 5:15934691-16374511 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039370 Cacna2d1-201 15934691-16374511 protein_coding
  ENSMUST00000078272 Cacna2d1-202 15934691-16374511 protein_coding
  ENSMUST00000101581 Cacna2d1-203 15934691-16374511 protein_coding
  ENSMUST00000115281 Cacna2d1-204 15934829-16370727 protein_coding
  ENSMUST00000167946 Cacna2d1-205 15934691-16374511 protein_coding
  ENSMUST00000180204 Cacna2d1-206 15934691-16374511 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039370ENSMUST00000078272ENSMUST00000101581ENSMUST00000115281ENSMUST00000180204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039370 N/A 2.718±0.00 N/A N/A 6.482±0.56 N/A N/A N/A N/A 1.163±0.00 40.372±6.22 N/A N/A N/A
ENSMUST00000078272 2.208±1.45 7.643±1.81 6.332±0.00 N/A 1.024±0.09 0.983±0.26 N/A 0.370±0.03 0.083±0.05 2.555±0.31 N/A 3.687±0.72 0.085±0.05 0.117±0.01
ENSMUST00000101581 N/A N/A N/A 15.970±2.43 0.688±0.00 0.674±0.20 2.028±0.00 0.704±0.00 0.008±0.00 N/A N/A N/A N/A N/A
ENSMUST00000115281 3.189±0.27 10.492±4.17 N/A 18.802±0.00 0.385±0.00 1.142±0.55 N/A N/A 0.052±0.03 0.748±0.00 N/A 3.325±0.99 0.157±0.08 0.719±0.25
ENSMUST00000180204 N/A 8.087±3.72 5.201±2.52 3.574±1.61 1.205±0.13 0.779±0.27 5.107±1.62 0.687±0.00 0.042±0.01 0.880±0.00 N/A 4.629±1.25 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z1 CIL_0008Z1_0002 VISTA 5:15666035-16267426
CIL_0003CV CIL_0003CV_0002 CGP 5:15934691-16619439

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006816 IEA calcium ion transport
GO:0016529 IDA sarcoplasmic reticulum
GO:0030315 IDA T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0051924 IMP regulation of calcium ion transport
GO:0070062 IEA extracellular vesicular exosome
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014804 cacna2d1a calcium channel, voltage-dependent, alpha 2/delta subunit 1a protein_coding Danio_rerio
ENSDARG00000040406 CACNA2D1 (2 of 3) calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein_coding Danio_rerio
ENSDARG00000073752 CACNA2D1 (3 of 3) calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein_coding Danio_rerio
ENSG00000153956 CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein_coding Homo_sapiens

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