C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, alpha 2/delta subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356860 CACNA2D1-001 ENSG00000153956 9606 - 7:81946444-82443798 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000356860
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000356860 1.290±0.00 6.453±1.29 7.174±5.81 2.119±0.85 1.485±0.00 0.782±0.52 0.483±0.34 0.445±0.00 0.671±0.38 0.205±0.00 0.334±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052I CIL_00052I_0003 CGP 7:81699006-82443798

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006816 IDA calcium ion transport
GO:0016529 IEA sarcoplasmic reticulum
GO:0030315 IEA T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0051924 IDA regulation of calcium ion transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101581 Cacna2d1-203 protein_coding Mus_musculus 0 5590
ENSMUST00000167946 Cacna2d1-205 protein_coding Mus_musculus 0 5529
ENSMUST00000180204 Cacna2d1-206 protein_coding Mus_musculus 0 5494
ENSMUST00000078272 Cacna2d1-202 protein_coding Mus_musculus 0 5461
ENSMUST00000115281 Cacna2d1-204 protein_coding Mus_musculus 0 4235
ENSMUST00000039370 Cacna2d1-201 protein_coding Mus_musculus 0 3349

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