C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00052I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045544-ENSDARG00000014804 CGP 7955 4:18645067-18818403
GeneTranscriptPositionBiotype
ENSDARG00000014804 (cacna2d1a)
calcium channel, voltage-dependent, alpha 2/delta subunit 1a 		ENSDART00000014440 (cacna2d1a-001) 18703097-18818403 protein_coding
ENSDART00000105967 (cacna2d1a-201) 18699244-18818308 protein_coding
ENSDARG00000045544 (hgfa)
hepatocyte growth factor a 		ENSDART00000066964 (hgfa-201) 18645067-18676718 protein_coding
ENSDART00000100952 (hgfa-001) 18646376-18676721 protein_coding
CIL_00052I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063316-ENSDARG00000040406 CGP 7955 18:9365832-9507450
GeneTranscriptPositionBiotype
ENSDARG00000040406 (CACNA2D1 (2 of 3))
calcium channel, voltage-dependent, alpha 2/delta subunit 1 		ENSDART00000077152 (CACNA2D1 (2 of 3)-201) 9455464-9507450 protein_coding
ENSDARG00000063316 (HGF (2 of 2))
hepatocyte growth factor (hepapoietin A; scatter factor) 		ENSDART00000092421 (HGF (2 of 2)-201) 9365832-9400048 protein_coding
CIL_00052I_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000019991-ENSG00000153956 CGP 9606 7:81699006-82443798
GeneTranscriptPositionBiotype
ENSG00000019991 (HGF)
hepatocyte growth factor (hepapoietin A; scatter factor) 		ENST00000222390 (HGF-001) 81699006-81770198 protein_coding
ENST00000354224 (HGF-201) 81755121-81769971 protein_coding
ENST00000412881 (HGF-008) 81757246-81770398 protein_coding
ENST00000421558 (HGF-007) 81758704-81770438 protein_coding
ENST00000423064 (HGF-004) 81750889-81770105 protein_coding
ENST00000444829 (HGF-003) 81742691-81770031 protein_coding
ENST00000453018 (HGF-006) 81756986-81762996 protein_coding
ENST00000453411 (HGF-002) 81742732-81770014 protein_coding
ENST00000457544 (HGF-005) 81702581-81770048 protein_coding
ENST00000465234 (HGF-009) 81751916-81769999 retained_intron
ENSG00000153956 (CACNA2D1)
calcium channel, voltage-dependent, alpha 2/delta subunit 1 		ENST00000356253 (CACNA2D1-201) 81950102-82443715 protein_coding
ENST00000356860 (CACNA2D1-001) 81946444-82443798 protein_coding
ENST00000423588 (CACNA2D1-002) 82050336-82443716 protein_coding
ENST00000443883 (CACNA2D1-005) 81969881-82005790 protein_coding
ENST00000461275 (CACNA2D1-011) 82050935-82084836 processed_transcript
ENST00000464354 (CACNA2D1-004) 82005447-82033072 processed_transcript
ENST00000466806 (CACNA2D1-006) 82005331-82012251 retained_intron
ENST00000469297 (CACNA2D1-009) 81961894-81964282 retained_intron
ENST00000475237 (CACNA2D1-010) 82007662-82032901 retained_intron
ENST00000484706 (CACNA2D1-003) 82117044-82343236 processed_transcript
ENST00000486539 (CACNA2D1-008) 81967165-81971089 retained_intron
ENST00000492734 (CACNA2D1-007) 82012043-82038235 retained_intron
ENSG00000223770 (MIR1255B1)
microRNA 1255b-1 		ENST00000439234 (MIR1255B1-001) 82009177-82029955 antisense
ENST00000454066 (MIR1255B1-002) 82009192-82028343 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00052I_0001ENSDARG00000014804ENSDART00000014440ENSDART00000105967ENSDARG00000045544ENSDART00000066964ENSDART00000100952CIL_00052I_0002ENSDARG00000040406ENSDART00000077152ENSDARG00000063316ENSDART00000092421CIL_00052I_0003ENSG00000019991ENST00000222390ENST00000354224ENST00000412881ENST00000421558ENST00000423064ENST00000444829ENST00000453018ENST00000453411ENST00000457544ENST00000465234ENSG00000153956ENST00000356253ENST00000356860ENST00000423588ENST00000443883ENST00000461275ENST00000464354ENST00000466806ENST00000469297ENST00000475237ENST00000484706ENST00000486539ENST00000492734ENSG00000223770ENST00000439234ENST00000454066
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00052I_0001ENSDARG00000014804ENSDART00000014440ENSDART00000105967ENSDARG00000045544ENSDART00000066964ENSDART00000100952CIL_00052I_0002ENSDARG00000040406ENSDART00000077152ENSDARG00000063316ENSDART00000092421CIL_00052I_0003ENSG00000019991ENST00000222390ENST00000354224ENST00000423064ENST00000444829ENST00000457544ENSG00000153956ENST00000356253ENST00000356860ENST00000423588ENST00000443883ENSG00000223770ENST00000439234ENST00000454066
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014804 ENSDART00000014440 N/A N/A N/A N/A N/A N/A 1.612±0.00 0.711±0.00 0.013±0.00 N/A N/A N/A N/A N/A
ENSDART00000105967 N/A N/A N/A 0.736±0.18 N/A N/A 3.496±1.84 1.187±0.00 N/A N/A 4.867±0.00 N/A N/A N/A
ENSDARG00000045544 ENSDART00000066964 N/A N/A N/A 0.128±0.02 N/A N/A 0.773±0.58 0.190±0.11 N/A N/A 0.078±0.00 N/A N/A N/A
ENSDART00000100952 N/A N/A N/A N/A N/A N/A 0.216±0.00 N/A N/A N/A 0.123±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040406 ENSDART00000077152 N/A N/A N/A 1.276±0.24 N/A N/A 0.035±0.00 0.192±0.00 0.031±0.00 N/A N/A N/A N/A N/A
ENSDARG00000063316 ENSDART00000092421 N/A N/A N/A 0.247±0.14 N/A N/A 0.046±0.01 N/A 0.870±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000019991 ENST00000222390 N/A 0.641±0.00 0.921±0.00 0.150±0.00 0.393±0.00 N/A 0.251±0.00 0.541±0.00 1.911±0.00 N/A N/A 0.323±0.18 10.140±2.44 N/A
ENST00000354224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.415±0.00 N/A N/A
ENST00000412881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423064 N/A N/A N/A 0.389±0.00 N/A N/A N/A N/A N/A N/A 0.098±0.00 0.152±0.00 N/A 0.198±0.00
ENST00000444829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.503±0.00 N/A N/A N/A
ENST00000453018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457544 0.443±0.00 N/A 0.848±0.00 0.453±0.07 1.070±0.00 0.936±0.00 N/A 2.226±0.00 3.406±0.00 5.484±0.00 N/A 0.327±0.00 N/A 0.435±0.00
ENST00000465234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000153956 ENST00000356253 N/A N/A N/A 2.539±0.00 N/A N/A N/A N/A 1.823±0.00 N/A 10.408±0.00 N/A N/A N/A
ENST00000356860 1.290±0.00 N/A N/A 6.453±1.29 7.174±5.81 2.119±0.85 1.485±0.00 0.782±0.52 0.483±0.34 0.445±0.00 N/A 0.671±0.38 0.205±0.00 0.334±0.00
ENST00000423588 N/A N/A N/A N/A N/A N/A 4.622±0.00 N/A 7.873±0.00 N/A 16.667±0.00 N/A N/A N/A
ENST00000443883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A
ENST00000461275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223770 ENST00000439234 N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454066 0.078±0.00 0.094±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.02 0.031±0.00 0.024±0.00

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