C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 10 open reading frame 90
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154493 C10orf90 9606 - 10:126424997-126670446 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284694 C10orf90-201 126425009-126521441 protein_coding
  ENST00000356858 C10orf90-001 126425768-126520859 protein_coding
  ENST00000368674 C10orf90-002 126502660-126524823 processed_transcript
  ENST00000424927 C10orf90-004 126424997-126504118 protein_coding
  ENST00000432642 C10orf90-003 126426066-126521441 protein_coding
  ENST00000463082 C10orf90-006 126504874-126521466 nonsense_mediated_decay
  ENST00000480379 C10orf90-005 126425552-126463376 protein_coding
  ENST00000488181 C10orf90-007 126504432-126670446 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000284694ENST00000424927ENST00000432642ENST00000463082ENST00000480379ENST00000488181
Transcript ID Adipose Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000284694 N/A N/A 0.102±0.00 0.020±0.00 N/A N/A N/A 0.024±0.00 N/A 0.858±0.00
ENST00000424927 0.116±0.00 1.774±0.39 1.331±0.00 0.237±0.00 N/A N/A N/A 0.023±0.01 0.124±0.00 1.362±0.94
ENST00000432642 N/A 1.080±0.00 N/A N/A 0.017±0.00 N/A 0.064±0.00 0.008±0.00 N/A 2.807±1.88
ENST00000463082 N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480379 N/A N/A 0.095±0.00 0.008±0.00 N/A 0.054±0.00 0.147±0.00 0.045±0.00 0.036±0.00 N/A
ENST00000488181 N/A 1.859±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VM CIL_0003VM_0001 CGP 10:126012381-126670446
CIL_00047A CIL_00047A_0002 CGP 10:126424997-127452517

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005813 IEA:IDA centrosome
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007095 IEA mitotic G2 DNA damage checkpoint
GO:0009411 IEA response to UV
GO:0010212 IEA response to ionizing radiation
GO:0015629 IDA actin cytoskeleton
GO:0030308 IEA negative regulation of cell growth
GO:0042826 IEA histone deacetylase binding
GO:0050821 IEA protein stabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089024 C12H10orf90 chromosome 10 open reading frame 90 protein_coding Danio_rerio
ENSMUSG00000030994 D7Ertd443e DNA segment, Chr 7, ERATO Doi 443, expressed protein_coding Mus_musculus

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