C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphocyte antigen 96
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154589 LY96 9606 + 8:73991352-74029087 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284818 LY96-001 73991352-74029087 protein_coding
  ENST00000518893 LY96-003 73991426-74029074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284818ENST00000518893
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284818 4.250±0.00 15.836±0.00 0.133±0.00 1.073±0.34 5.461±0.81 2.446±0.90 1.837±0.83 1.820±0.03 2.277±0.48 7.092±1.64 1.570±0.00 5.394±3.24 8.297±2.12 2.184±1.65
ENST00000518893 1.209±0.00 3.134±0.00 N/A 0.527±0.05 N/A 1.404±0.25 1.900±0.00 N/A 1.810±0.00 3.049±0.00 0.609±0.00 1.546±1.03 1.479±0.00 0.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OM CIL_0002OM_0001 CGP 8:73972437-74029087
CIL_0002OK CIL_0002OK_0001 CGP 8:73991352-74321328

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001875 IDA lipopolysaccharide receptor activity
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002755 TAS MyD88-dependent toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005886 TAS plasma membrane
GO:0006954 IEA inflammatory response
GO:0006968 TAS cellular defense response
GO:0007166 TAS cell surface receptor signaling pathway
GO:0007249 TAS I-kappaB kinase/NF-kappaB signaling
GO:0010008 TAS endosome membrane
GO:0015026 TAS coreceptor activity
GO:0031663 IDA lipopolysaccharide-mediated signaling pathway
GO:0031666 IEA positive regulation of lipopolysaccharide-mediated signaling pathway
GO:0032496 IDA response to lipopolysaccharide
GO:0032497 IDA detection of lipopolysaccharide
GO:0034134 TAS toll-like receptor 2 signaling pathway
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0038123 TAS toll-like receptor TLR1:TLR2 signaling pathway
GO:0038124 TAS toll-like receptor TLR6:TLR2 signaling pathway
GO:0045087 TAS innate immune response
GO:0046696 IDA lipopolysaccharide receptor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000025779 Ly96 lymphocyte antigen 96 protein_coding Mus_musculus

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