C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphocyte antigen 96
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025779 Ly96 10090 + 1:16688051-16709611 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026881 Ly96-001 16688433-16709611 protein_coding
  ENSMUST00000190366 Ly96-002 16688508-16709537 protein_coding
  ENSMUST00000191260 Ly96-003 16688051-16691947 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026881ENSMUST00000190366ENSMUST00000191260
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026881 3.841±0.35 2.119±1.30 8.856±0.86 0.553±0.18 3.336±0.78 1.690±0.90 2.275±0.33 5.095±1.72 3.083±0.88 3.377±0.53 0.337±0.21 2.096±2.04 3.543±2.19 0.762±0.20
ENSMUST00000190366 N/A 0.316±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.00 1.085±0.10 0.629±0.00 N/A
ENSMUST00000191260 0.641±0.03 N/A N/A 0.068±0.00 N/A 0.309±0.00 N/A N/A 0.317±0.09 N/A 0.090±0.00 0.492±0.00 0.122±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OM CIL_0002OM_0002 CGP 1:16665207-16709611
CIL_0002OK CIL_0002OK_0002 CGP 1:16688051-17097889

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001875 ISS lipopolysaccharide receptor activity
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0006954 IEA inflammatory response
GO:0031663 IEA lipopolysaccharide-mediated signaling pathway
GO:0031666 IDA positive regulation of lipopolysaccharide-mediated signaling pathway
GO:0032496 IEA response to lipopolysaccharide
GO:0032497 ISS detection of lipopolysaccharide
GO:0045087 IEA innate immune response
GO:0046696 IEA lipopolysaccharide receptor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000154589 LY96 lymphocyte antigen 96 protein_coding Homo_sapiens

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