C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002OK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154589-ENSG00000104369 CGP 9606 8:73991352-74321328
GeneTranscriptPositionBiotype
ENSG00000104369 (JPH1)
junctophilin 1 		ENST00000342232 (JPH1-001) 74234700-74321328 protein_coding
ENST00000518195 (JPH1-004) 74236803-74244788 processed_transcript
ENST00000519947 (JPH1-003) 74237233-74321327 nonsense_mediated_decay
ENSG00000104381 (GDAP1)
ganglioside induced differentiation associated protein 1 		ENST00000220822 (GDAP1-001) 74350382-74366876 protein_coding
ENST00000434412 (GDAP1-002) 74350418-74364604 protein_coding
ENST00000520797 (GDAP1-008) 74321514-74364260 processed_transcript
ENST00000521096 (GDAP1-007) 74321130-74364290 processed_transcript
ENST00000522568 (GDAP1-003) 74350444-74364741 nonsense_mediated_decay
ENST00000523640 (GDAP1-006) 74350434-74360248 processed_transcript
ENST00000524195 (GDAP1-005) 74362951-74488872 processed_transcript
ENST00000524366 (GDAP1-004) 74350444-74364029 processed_transcript
ENSG00000154589 (LY96)
lymphocyte antigen 96 		ENST00000284818 (LY96-001) 73991352-74029087 protein_coding
ENST00000518893 (LY96-003) 73991426-74029074 protein_coding
ENSG00000212348 (RNU6-1300P)
RNA, U6 small nuclear 1300, pseudogene 		ENST00000391046 (RNU6-1300P-201) 74048677-74048784 snRNA
ENSG00000240047 (RPS3AP32)
ribosomal protein S3a pseudogene 32 		ENST00000479876 (RPS3AP32-001) 74055882-74056647 processed_pseudogene
ENSG00000253115 (RP11-6I2.4)
 ENST00000522498 (RP11-6I2.4-001) 74103516-74106744 lincRNA
ENSG00000253983 (RP1-16A9.1)
 ENST00000522339 (RP1-16A9.1-001) 74199396-74208441 antisense
ENSG00000254288 (RP11-6I2.3)
 ENST00000519323 (RP11-6I2.3-001) 74052340-74099853 lincRNA
CIL_0002OK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025779-ENSMUSG00000042686 CGP 10090 1:16688051-17097889
GeneTranscriptPositionBiotype
ENSMUSG00000025779 (Ly96)
lymphocyte antigen 96 		ENSMUST00000026881 (Ly96-001) 16688433-16709611 protein_coding
ENSMUST00000190366 (Ly96-002) 16688508-16709537 protein_coding
ENSMUST00000191260 (Ly96-003) 16688051-16691947 retained_intron
ENSMUSG00000042686 (Jph1)
junctophilin 1 		ENSMUST00000038382 (Jph1-001) 16994938-17097889 protein_coding
ENSMUST00000186024 (Jph1-002) 16964560-17004219 nonsense_mediated_decay
ENSMUSG00000091020 (Gm5828)
predicted gene 5828 		ENSMUST00000071842 (Gm5828-001) 16768279-16770138 processed_pseudogene
ENSMUSG00000100093 (RP23-470P10.1)
predicted gene 29649 		ENSMUST00000185649 (RP23-470P10.1-001) 16758205-16758623 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OK_0001ENSG00000104369ENST00000342232ENST00000518195ENST00000519947ENSG00000104381ENST00000220822ENST00000434412ENST00000520797ENST00000521096ENST00000522568ENST00000523640ENST00000524195ENST00000524366ENSG00000154589ENST00000284818ENST00000518893ENSG00000212348ENST00000391046ENSG00000240047ENST00000479876ENSG00000253115ENST00000522498ENSG00000253983ENST00000522339ENSG00000254288ENST00000519323CIL_0002OK_0002ENSMUSG00000025779ENSMUST00000026881ENSMUST00000190366ENSMUST00000191260ENSMUSG00000042686ENSMUST00000038382ENSMUST00000186024ENSMUSG00000091020ENSMUST00000071842ENSMUSG00000100093ENSMUST00000185649
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OK_0001ENSG00000104369ENST00000342232ENST00000519947ENSG00000104381ENST00000220822ENST00000434412ENST00000521096ENSG00000154589ENST00000284818ENST00000518893ENSG00000212348ENST00000391046ENSG00000240047ENST00000479876ENSG00000253115ENST00000522498ENSG00000253983ENST00000522339ENSG00000254288ENST00000519323CIL_0002OK_0002ENSMUSG00000025779ENSMUST00000026881ENSMUST00000190366ENSMUST00000191260ENSMUSG00000042686ENSMUST00000038382ENSMUSG00000091020ENSMUST00000071842ENSMUSG00000100093ENSMUST00000185649
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104369 ENST00000342232 N/A 0.237±0.00 0.183±0.00 3.672±0.00 2.522±0.00 0.409±0.00 2.682±0.00 0.585±0.00 0.397±0.00 0.528±0.08 20.971±7.06 1.554±0.00 0.329±0.00 0.720±0.07
ENST00000518195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519947 N/A N/A N/A N/A N/A N/A 3.922±0.00 N/A N/A N/A 24.760±13.21 N/A N/A N/A
ENSG00000104381 ENST00000220822 0.223±0.00 N/A 0.895±0.00 17.060±0.78 N/A N/A 0.212±0.00 0.429±0.00 N/A 1.206±0.00 N/A 1.180±0.61 N/A 1.203±0.00
ENST00000434412 N/A N/A N/A N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A N/A N/A N/A
ENST00000520797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.557±0.00 0.472±0.00 2.765±0.00
ENST00000522568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000154589 ENST00000284818 4.250±0.00 15.836±0.00 0.133±0.00 1.073±0.34 5.461±0.81 2.446±0.90 1.837±0.83 1.820±0.03 2.277±0.48 7.092±1.64 1.570±0.00 5.394±3.24 8.297±2.12 2.184±1.65
ENST00000518893 1.209±0.00 3.134±0.00 N/A 0.527±0.05 N/A 1.404±0.25 1.900±0.00 N/A 1.810±0.00 3.049±0.00 0.609±0.00 1.546±1.03 1.479±0.00 0.715±0.00
ENSG00000212348 ENST00000391046 0.394±0.00 1.003±0.00 N/A N/A 1.596±0.00 1.143±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240047 ENST00000479876 0.059±0.00 0.031±0.00 N/A 0.158±0.00 N/A N/A N/A N/A 0.329±0.00 N/A N/A N/A N/A 0.014±0.00
ENSG00000253115 ENST00000522498 N/A N/A N/A N/A 0.169±0.14 N/A N/A N/A N/A N/A 1.833±1.73 0.176±0.00 N/A N/A
ENSG00000253983 ENST00000522339 0.041±0.00 0.029±0.00 N/A 0.019±0.00 0.036±0.00 N/A N/A 0.066±0.00 0.140±0.00 0.047±0.00 N/A 0.033±0.01 0.095±0.05 0.045±0.00
ENSG00000254288 ENST00000519323 0.066±0.00 0.082±0.00 0.632±0.00 0.206±0.00 0.208±0.00 0.177±0.00 0.076±0.00 0.236±0.12 0.070±0.00 0.428±0.15 N/A 0.330±0.12 0.055±0.01 0.068±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025779 ENSMUST00000026881 3.841±0.35 2.119±1.30 8.856±0.86 0.553±0.18 3.336±0.78 1.690±0.90 2.275±0.33 5.095±1.72 3.083±0.88 3.377±0.53 0.337±0.21 2.096±2.04 3.543±2.19 0.762±0.20
ENSMUST00000190366 N/A 0.316±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.00 1.085±0.10 0.629±0.00 N/A
ENSMUST00000191260 0.641±0.03 N/A N/A 0.068±0.00 N/A 0.309±0.00 N/A N/A 0.317±0.09 N/A 0.090±0.00 0.492±0.00 0.122±0.00 N/A
ENSMUSG00000042686 ENSMUST00000038382 0.435±0.17 0.108±0.05 5.158±0.18 0.470±0.22 2.013±1.82 0.348±0.24 1.733±0.42 0.259±0.13 0.124±0.04 0.646±0.25 30.632±2.91 0.821±0.56 0.146±0.05 0.228±0.08
ENSMUST00000186024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000091020 ENSMUST00000071842 0.016±0.00 N/A 0.090±0.00 0.092±0.10 0.045±0.03 N/A 0.027±0.01 0.028±0.01 0.018±0.01 N/A N/A 0.020±0.00 0.799±0.63 1.172±0.43
ENSMUSG00000100093 ENSMUST00000185649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00

Loading