C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002OM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175606-ENSG00000154589 CGP 9606 8:73972437-74029087
GeneTranscriptPositionBiotype
ENSG00000154589 (LY96)
lymphocyte antigen 96
ENST00000284818 (LY96-001) 73991352-74029087 protein_coding
ENST00000518893 (LY96-003) 73991426-74029074 protein_coding
ENSG00000175606 (TMEM70)
transmembrane protein 70
ENST00000312184 (TMEM70-001) 73976209-73982783 protein_coding
ENST00000416961 (TMEM70-002) 73976195-73981586 nonsense_mediated_decay
ENST00000517439 (TMEM70-004) 73976207-73981366 protein_coding
ENST00000517614 (TMEM70-003) 73976219-73979021 retained_intron
ENST00000519551 (TMEM70-005) 73978748-73981481 retained_intron
ENST00000520167 (TMEM70-007) 73972437-73979134 processed_transcript
ENST00000523794 (TMEM70-006) 73972552-73976491 processed_transcript
ENSG00000244295 (RPS20P21)
ribosomal protein S20 pseudogene 21
ENST00000466859 (RPS20P21-001) 73982125-73982467 processed_pseudogene
ENSG00000253833 (RP11-367E12.4)
ENST00000517767 (RP11-367E12.4-001) 73984493-73984883 processed_pseudogene
CIL_0002OM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025940-ENSMUSG00000025779 CGP 10090 1:16665207-16709611
GeneTranscriptPositionBiotype
ENSMUSG00000025779 (Ly96)
lymphocyte antigen 96
ENSMUST00000026881 (Ly96-001) 16688433-16709611 protein_coding
ENSMUST00000190366 (Ly96-002) 16688508-16709537 protein_coding
ENSMUST00000191260 (Ly96-003) 16688051-16691947 retained_intron
ENSMUSG00000025940 (Tmem70)
transmembrane protein 70
ENSMUST00000065373 (Tmem70-002) 16665210-16678275 protein_coding
ENSMUST00000176451 (Tmem70-004) 16665236-16665811 processed_transcript
ENSMUST00000177501 (Tmem70-001) 16665207-16678195 protein_coding
ENSMUST00000177532 (Tmem70-003) 16665210-16677215 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OM_0001ENSG00000154589ENST00000284818ENST00000518893ENSG00000175606ENST00000312184ENST00000416961ENST00000517439ENST00000517614ENST00000519551ENST00000520167ENST00000523794ENSG00000244295ENST00000466859ENSG00000253833ENST00000517767CIL_0002OM_0002ENSMUSG00000025779ENSMUST00000026881ENSMUST00000190366ENSMUST00000191260ENSMUSG00000025940ENSMUST00000065373ENSMUST00000176451ENSMUST00000177501ENSMUST00000177532
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OM_0001ENSG00000154589ENST00000284818ENST00000518893ENSG00000175606ENST00000312184ENST00000416961ENST00000517439ENST00000517614ENST00000519551ENST00000520167ENSG00000244295ENST00000466859ENSG00000253833ENST00000517767CIL_0002OM_0002ENSMUSG00000025779ENSMUST00000026881ENSMUST00000190366ENSMUST00000191260ENSMUSG00000025940ENSMUST00000065373ENSMUST00000176451ENSMUST00000177501ENSMUST00000177532
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000154589 ENST00000284818 4.250±0.00 15.836±0.00 0.133±0.00 1.073±0.34 5.461±0.81 2.446±0.90 1.837±0.83 1.820±0.03 2.277±0.48 7.092±1.64 1.570±0.00 5.394±3.24 8.297±2.12 2.184±1.65
ENST00000518893 1.209±0.00 3.134±0.00 N/A 0.527±0.05 N/A 1.404±0.25 1.900±0.00 N/A 1.810±0.00 3.049±0.00 0.609±0.00 1.546±1.03 1.479±0.00 0.715±0.00
ENSG00000175606 ENST00000312184 1.020±0.00 13.753±0.00 0.360±0.00 4.943±2.21 1.882±1.52 1.707±0.39 1.502±0.66 2.832±0.59 2.183±0.33 1.070±0.84 6.670±6.03 4.324±2.74 2.215±0.58 2.686±0.00
ENST00000416961 2.933±0.00 17.354±0.00 0.563±0.00 9.491±0.00 6.996±3.30 3.281±1.28 3.958±2.68 5.822±1.23 5.297±2.38 N/A 57.494±0.00 7.248±3.18 5.589±0.00 4.828±2.55
ENST00000517439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.289±0.00 N/A
ENST00000517614 N/A N/A N/A N/A N/A N/A 1.370±0.00 N/A N/A N/A N/A 15.518±0.00 7.724±0.00 11.585±0.00
ENST00000519551 N/A N/A N/A 9.483±0.00 N/A N/A N/A N/A N/A 2.008±0.00 N/A N/A N/A N/A
ENST00000520167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.479±0.00
ENST00000523794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244295 ENST00000466859 N/A N/A 0.892±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253833 ENST00000517767 0.089±0.00 0.397±0.00 N/A 0.175±0.00 0.879±0.00 0.573±0.36 0.054±0.00 0.679±0.39 0.296±0.00 0.222±0.00 10.735±0.00 0.106±0.03 0.041±0.00 0.234±0.21
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025779 ENSMUST00000026881 3.841±0.35 2.119±1.30 8.856±0.86 0.553±0.18 3.336±0.78 1.690±0.90 2.275±0.33 5.095±1.72 3.083±0.88 3.377±0.53 0.337±0.21 2.096±2.04 3.543±2.19 0.762±0.20
ENSMUST00000190366 N/A 0.316±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.00 1.085±0.10 0.629±0.00 N/A
ENSMUST00000191260 0.641±0.03 N/A N/A 0.068±0.00 N/A 0.309±0.00 N/A N/A 0.317±0.09 N/A 0.090±0.00 0.492±0.00 0.122±0.00 N/A
ENSMUSG00000025940 ENSMUST00000065373 16.914±0.66 55.429±13.41 21.822±5.76 8.237±5.23 18.546±6.63 16.655±3.10 23.659±3.42 24.996±4.81 18.595±2.74 9.919±1.33 19.883±1.95 18.915±11.22 12.852±5.58 5.990±1.00
ENSMUST00000176451 35.332±12.90 98.098±47.38 N/A 21.964±7.35 37.203±11.92 25.023±5.23 N/A 31.004±13.18 22.462±2.67 13.245±4.67 N/A 67.812±16.60 N/A 8.754±2.01
ENSMUST00000177501 7.261±1.10 14.115±0.00 3.894±0.00 3.822±2.35 8.891±6.26 4.748±0.75 9.960±1.88 7.194±1.58 4.368±1.04 2.615±0.38 4.589±0.84 7.674±2.46 6.132±4.66 2.428±0.58
ENSMUST00000177532 N/A N/A N/A N/A N/A 13.421±0.00 N/A 21.016±0.00 N/A N/A N/A 24.760±5.21 N/A N/A

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