C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: xeroderma pigmentosum, complementation group C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154767 XPC 9606 - 3:14145147-14178783 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285021 XPC-001 14145147-14178783 protein_coding
  ENST00000427795 XPC-006 14147467-14148928 retained_intron
  ENST00000452172 XPC-004 14164907-14170614 retained_intron
  ENST00000455144 XPC-005 14164366-14170460 retained_intron
  ENST00000476581 XPC-002 14145729-14178601 nonsense_mediated_decay
  ENST00000477324 XPC-008 14158807-14167267 retained_intron
  ENST00000511155 XPC-007 14168271-14178621 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaENST00000285021
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000285021 1.824±0.00 3.071±0.00 2.105±0.00 6.281±0.00 1.911±0.37 2.982±0.00 9.877±7.54 8.635±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GU CIL_0007GU_0001 CGP 3:14145147-14201119

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000404 TAS heteroduplex DNA loop binding
GO:0000405 TAS bubble DNA binding
GO:0000715 IDA nucleotide-excision repair, DNA damage recognition
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003677 IEA DNA binding
GO:0003684 IDA:IEA damaged DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006281 TAS DNA repair
GO:0006289 IDA:IEA nucleotide-excision repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0010224 IEA response to UV-B
GO:0031573 IEA intra-S DNA damage checkpoint
GO:0042493 IEA response to drug
GO:0070062 IDA extracellular vesicular exosome
GO:0071942 IDA XPC complex
GO:1901990 IMP regulation of mitotic cell cycle phase transition

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039754 xpc xeroderma pigmentosum, complementation group C protein_coding Danio_rerio
ENSMUSG00000030094 Xpc xeroderma pigmentosum, complementation group C protein_coding Mus_musculus

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