C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: xeroderma pigmentosum, complementation group C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476581 XPC-002 ENSG00000154767 9606 - 3:14145729-14178601 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GU CIL_0007GU_0001 CGP 3:14145147-14201119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000404 TAS heteroduplex DNA loop binding
GO:0000405 TAS bubble DNA binding
GO:0000715 IDA nucleotide-excision repair, DNA damage recognition
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003684 IDA damaged DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006281 TAS DNA repair
GO:0006289 IDA nucleotide-excision repair
GO:0070062 IDA extracellular vesicular exosome
GO:0071942 IDA XPC complex
GO:1901990 IMP regulation of mitotic cell cycle phase transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032182 Xpc-001 protein_coding Mus_musculus 0 1827
ENSMUST00000150279 Xpc-002 retained_intron Mus_musculus 0 1114

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