C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 28 (concentrative nucleoside transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156222 SLC28A1 9606 + 15:84884654-84945796 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286749 SLC28A1-001 84884678-84945796 protein_coding
  ENST00000338602 SLC28A1-002 84884654-84896046 protein_coding
  ENST00000394573 SLC28A1-201 84884661-84945796 protein_coding
  ENST00000538177 SLC28A1-202 84884661-84945796 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286749ENST00000338602ENST00000394573ENST00000538177
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286749 N/A N/A 0.023±0.00 0.047±0.00 0.167±0.00 3.208±0.00 N/A N/A N/A 0.130±0.00 0.147±0.01 N/A
ENST00000338602 N/A 1.694±0.00 N/A 0.105±0.00 0.069±0.05 4.928±3.35 9.059±0.00 0.067±0.00 N/A 0.154±0.00 N/A 0.030±0.00
ENST00000394573 N/A N/A N/A N/A N/A N/A 14.334±0.00 N/A N/A N/A N/A 0.023±0.00
ENST00000538177 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A 0.127±0.00 0.073±0.00 0.892±0.01 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000M4 CIL_0000M4_0001 CGP 15:84816680-84945796
CIL_0000M0 CIL_0000M0_0001 CGP 15:84884654-85139145

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001882 IEA nucleoside binding
GO:0005337 TAS nucleoside transmembrane transporter activity
GO:0005415 IEA nucleoside:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006139 TAS nucleobase-containing compound metabolic process
GO:0006810 IEA transport
GO:0015858 TAS nucleoside transport
GO:0016020 TAS:IEA membrane
GO:0055085 TAS transmembrane transport
GO:1901642 IEA nucleoside transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060879 SLC28A2 solute carrier family 28 (concentrative nucleoside transporter), member 2 protein_coding Danio_rerio
ENSMUSG00000025726 Slc28a1 solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 protein_coding Mus_musculus

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