C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000M4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136383-ENSG00000156222 CGP 9606 15:84816680-84945796
GeneTranscriptPositionBiotype
ENSG00000136383 (ALPK3)
alpha-kinase 3 		ENST00000258888 (ALPK3-001) 84816680-84873482 protein_coding
ENST00000558077 (ALPK3-002) 84863529-84868212 retained_intron
ENSG00000156222 (SLC28A1)
solute carrier family 28 (concentrative nucleoside transporter), member 1 		ENST00000286749 (SLC28A1-001) 84884678-84945796 protein_coding
ENST00000338602 (SLC28A1-002) 84884654-84896046 protein_coding
ENST00000394573 (SLC28A1-201) 84884661-84945796 protein_coding
ENST00000538177 (SLC28A1-202) 84884661-84945796 protein_coding
ENSG00000207037 (RNU6-339P)
RNA, U6 small nuclear 339, pseudogene 		ENST00000384310 (RNU6-339P-201) 84938416-84938522 snRNA
ENSG00000271044 (RP11-255M6.1)
 ENST00000604365 (RP11-255M6.1-001) 84940504-84941133 processed_pseudogene
CIL_0000M4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038763-ENSMUSG00000025726 CGP 10090 7:81057600-81170416
GeneTranscriptPositionBiotype
ENSMUSG00000025726 (Slc28a1)
solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 		ENSMUST00000026820 (Slc28a1-001) 81114799-81170416 protein_coding
ENSMUST00000119083 (Slc28a1-002) 81114850-81170416 protein_coding
ENSMUSG00000038763 (Alpk3)
alpha-kinase 3 		ENSMUST00000107348 (Alpk3-001) 81057600-81105612 protein_coding
ENSMUST00000151115 (Alpk3-002) 81094831-81095693 retained_intron
ENSMUSG00000083820 (Gm6415)
predicted pseudogene 6415 		ENSMUST00000118488 (Gm6415-001) 81161397-81161744 processed_pseudogene
ENSMUSG00000085194 (Gm16012)
predicted gene 16012 		ENSMUST00000148597 (Gm16012-001) 81059113-81066307 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000M4_0001ENSG00000136383ENST00000258888ENST00000558077ENSG00000156222ENST00000286749ENST00000338602ENST00000394573ENST00000538177ENSG00000207037ENST00000384310ENSG00000271044ENST00000604365CIL_0000M4_0002ENSMUSG00000025726ENSMUST00000026820ENSMUST00000119083ENSMUSG00000038763ENSMUST00000107348ENSMUST00000151115ENSMUSG00000083820ENSMUST00000118488ENSMUSG00000085194ENSMUST00000148597
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000M4_0001ENSG00000136383ENST00000258888ENSG00000156222ENST00000286749ENST00000338602ENST00000394573ENST00000538177ENSG00000207037ENST00000384310ENSG00000271044ENST00000604365CIL_0000M4_0002ENSMUSG00000025726ENSMUST00000026820ENSMUSG00000038763ENSMUST00000107348ENSMUSG00000083820ENSMUST00000118488ENSMUSG00000085194ENSMUST00000148597
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136383 ENST00000258888 2.532±0.00 0.373±0.00 N/A 0.670±0.00 1.929±1.82 1.342±0.00 11.031±10.00 1.711±1.53 1.279±0.12 2.281±1.57 54.919±31.13 0.365±0.24 0.425±0.03 1.930±0.00
ENST00000558077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000156222 ENST00000286749 N/A N/A N/A 0.023±0.00 0.047±0.00 N/A 0.167±0.00 3.208±0.00 N/A N/A N/A 0.130±0.00 0.147±0.01 N/A
ENST00000338602 N/A N/A 1.694±0.00 N/A 0.105±0.00 N/A 0.069±0.05 4.928±3.35 9.059±0.00 0.067±0.00 N/A 0.154±0.00 N/A 0.030±0.00
ENST00000394573 N/A N/A N/A N/A N/A N/A N/A N/A 14.334±0.00 N/A N/A N/A N/A 0.023±0.00
ENST00000538177 N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00 0.073±0.00 0.892±0.01 N/A
ENSG00000207037 ENST00000384310 N/A N/A N/A N/A N/A N/A N/A N/A 0.921±0.00 N/A N/A N/A N/A N/A
ENSG00000271044 ENST00000604365 N/A N/A 0.239±0.00 N/A N/A N/A N/A 0.242±0.06 0.062±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025726 ENSMUST00000026820 0.065±0.03 0.022±0.01 0.013±0.00 0.015±0.01 0.048±0.02 0.030±0.01 0.058±0.00 7.713±2.08 0.279±0.21 0.054±0.03 0.156±0.05 0.415±0.19 2.017±2.53 0.502±0.47
ENSMUST00000119083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038763 ENSMUST00000107348 0.046±0.02 0.018±0.01 0.014±0.00 0.069±0.05 1.068±1.09 0.023±0.01 10.589±0.81 0.130±0.15 0.028±0.02 0.170±0.12 31.905±8.34 0.649±0.23 0.310±0.09 0.196±0.21
ENSMUST00000151115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083820 ENSMUST00000118488 N/A 0.293±0.00 N/A 0.180±0.00 N/A N/A N/A 0.643±0.48 0.111±0.04 N/A N/A 0.717±0.00 0.216±0.05 0.789±0.40
ENSMUSG00000085194 ENSMUST00000148597 0.171±0.00 0.656±0.00 0.045±0.01 0.587±0.28 0.856±0.48 N/A 0.248±0.07 0.209±0.01 0.148±0.15 N/A 0.204±0.13 1.534±0.73 0.127±0.03 0.175±0.00

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