C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Zic family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156925 ZIC3 9606 + X:137566142-137577691 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000287538 ZIC3-003 137566142-137571585 protein_coding
  ENST00000370606 ZIC3-001 137566518-137577691 protein_coding
  ENST00000478471 ZIC3-002 137568805-137569995 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyOvaryPlacentaTestisENST00000287538ENST00000370606
Transcript ID Brain Kidney Ovary Placenta Testis
ENST00000287538 0.235±0.00 N/A 0.010±0.00 0.014±0.00 0.382±0.20
ENST00000370606 0.093±0.00 0.010±0.00 N/A N/A 0.269±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PM CIL_0000PM_0002 CGP X:137030148-137577691
CIL_0007NT CIL_0007NT_0001 UCNEbase X:137234994-137982903

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007368 IMP determination of left/right symmetry
GO:0007389 IEA pattern specification process
GO:0009952 IEA anterior/posterior pattern specification
GO:0030154 IEA cell differentiation
GO:0030324 IMP lung development
GO:0035469 IMP determination of pancreatic left/right asymmetry
GO:0035545 IEA determination of left/right asymmetry in nervous system
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071907 IMP determination of digestive tract left/right asymmetry
GO:0071910 IMP determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071497 zic3 zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) protein_coding Danio_rerio
ENSMUSG00000067860 Zic3 zinc finger protein of the cerebellum 3 protein_coding Mus_musculus

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