C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007NT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ZIC3 UCNEbase 9606 X:137234994-137982903
GeneTranscriptPositionBiotype
ENSG00000156925 (ZIC3)
Zic family member 3 		ENST00000287538 (ZIC3-003) 137566142-137571585 protein_coding
ENST00000370606 (ZIC3-001) 137566518-137577691 protein_coding
ENST00000478471 (ZIC3-002) 137568805-137569995 processed_transcript
ENSG00000214748 (RP11-332E4.1)
 ENST00000442158 (RP11-332E4.1-001) 137324972-137325049 processed_pseudogene
ENSG00000224765 (RP1-137H15.2)
 ENST00000442841 (RP1-137H15.2-002) 137560669-137564387 antisense
ENST00000456631 (RP1-137H15.2-001) 137556191-137563925 antisense
ENSG00000229562 (ZFYVE9P1)
zinc finger, FYVE domain containing 9 pseudogene 1 		ENST00000416133 (ZFYVE9P1-001) 137660519-137662242 processed_pseudogene
ENSG00000237584 (RAC1P4)
ras-related C3 botulinum toxin substrate 1 pseudogene 4 		ENST00000419413 (RAC1P4-001) 137441258-137441836 processed_pseudogene
CIL_0007NT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ZIC3 UCNEbase 10090 X:57709462-58446094
GeneTranscriptPositionBiotype
ENSMUSG00000067860 (Zic3)
zinc finger protein of the cerebellum 3 		ENSMUST00000088627 (Zic3-001) 58030643-58036559 protein_coding
ENSMUST00000088629 (Zic3-003) 58031010-58041736 protein_coding
ENSMUST00000088631 (Zic3-002) 58030999-58036559 protein_coding
ENSMUST00000137687 (Zic3-004) 58022700-58031448 protein_coding
ENSMUSG00000080710 (Gm8107)
predicted gene 8107 		ENSMUST00000117477 (Gm8107-001) 57736547-57738555 processed_pseudogene
ENSMUSG00000081922 (Gm14646)
predicted gene 14646 		ENSMUST00000122271 (Gm14646-001) 58401850-58401981 processed_pseudogene
ENSMUSG00000083821 (Gm14631)
predicted gene 14631 		ENSMUST00000119067 (Gm14631-001) 57753275-57753868 processed_pseudogene
ENSMUSG00000084394 (Gm8111)
predicted gene 8111 		ENSMUST00000117659 (Gm8111-001) 57745317-57746303 processed_pseudogene
CIL_0007NT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ZIC3 UCNEbase 7955 14:32857987-32980059
GeneTranscriptPositionBiotype
ENSDARG00000071496 (zic6)
zic family member 6 		ENSDART00000105760 (zic6-001) 32892151-32895857 protein_coding
ENSDARG00000071497 (zic3)
zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) 		ENSDART00000105761 (zic3-001) 32881568-32886494 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007NT_0001ENSG00000156925ENST00000287538ENST00000370606ENST00000478471ENSG00000214748ENST00000442158ENSG00000224765ENST00000442841ENST00000456631ENSG00000229562ENST00000416133ENSG00000237584ENST00000419413CIL_0007NT_0002ENSMUSG00000067860ENSMUST00000088627ENSMUST00000088629ENSMUST00000088631ENSMUST00000137687ENSMUSG00000080710ENSMUST00000117477ENSMUSG00000081922ENSMUST00000122271ENSMUSG00000083821ENSMUST00000119067ENSMUSG00000084394ENSMUST00000117659CIL_0007NT_0003ENSDARG00000071496ENSDART00000105760ENSDARG00000071497ENSDART00000105761
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007NT_0001ENSG00000156925ENST00000287538ENST00000370606ENSG00000214748ENST00000442158ENSG00000224765ENST00000442841ENSG00000229562ENST00000416133ENSG00000237584ENST00000419413CIL_0007NT_0002ENSMUSG00000067860ENSMUST00000088627ENSMUST00000088629ENSMUST00000088631ENSMUST00000137687ENSMUSG00000080710ENSMUST00000117477ENSMUSG00000081922ENSMUST00000122271ENSMUSG00000083821ENSMUST00000119067ENSMUSG00000084394ENSMUST00000117659CIL_0007NT_0003ENSDARG00000071496ENSDART00000105760ENSDARG00000071497ENSDART00000105761
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156925 ENST00000287538 N/A N/A 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 0.014±0.00 0.382±0.20
ENST00000370606 N/A N/A 0.093±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A 0.269±0.03
ENST00000478471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214748 ENST00000442158 1.392±0.00 0.494±0.00 N/A 1.557±0.00 0.937±0.00 N/A N/A N/A 0.502±0.00 N/A 67.825±0.00 N/A N/A
ENSG00000224765 ENST00000442841 N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A
ENST00000456631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229562 ENST00000416133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A 0.014±0.00
ENSG00000237584 ENST00000419413 0.098±0.00 0.126±0.00 0.133±0.00 0.154±0.00 0.071±0.00 0.023±0.00 0.025±0.00 0.022±0.00 0.161±0.00 0.087±0.00 0.104±0.00 N/A 0.115±0.00
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000067860 ENSMUST00000088627 N/A N/A 5.361±3.78 N/A N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.189±0.10 0.300±0.17
ENSMUST00000088629 N/A N/A N/A N/A N/A 0.044±0.01 N/A 0.005±0.00 N/A N/A 0.056±0.04 N/A 0.365±0.09
ENSMUST00000088631 N/A N/A 0.291±0.00 0.029±0.00 N/A N/A N/A 0.011±0.01 N/A N/A 0.039±0.03 0.472±0.45 0.057±0.00
ENSMUST00000137687 N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A N/A 0.316±0.10 N/A 1.326±0.30
ENSMUSG00000080710 ENSMUST00000117477 N/A N/A 0.042±0.01 N/A N/A N/A N/A N/A N/A N/A 0.043±0.05 N/A 0.026±0.01
ENSMUSG00000081922 ENSMUST00000122271 N/A N/A N/A N/A N/A N/A 1469.321±608.28 11.696±3.56 N/A N/A 6.143±0.00 N/A 686.282±0.00
ENSMUSG00000083821 ENSMUST00000119067 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084394 ENSMUST00000117659 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000071496 ENSDART00000105760 N/A N/A 2.303±1.57 N/A N/A 0.121±0.07 N/A N/A N/A 0.135±0.00 N/A N/A N/A
ENSDARG00000071497 ENSDART00000105761 N/A N/A 39.405±5.60 N/A N/A 0.080±0.04 0.009±0.01 0.047±0.00 N/A 1.589±0.00 N/A N/A N/A

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